Bioinformatics Education and Training Collection

Bioinformatics Education and Training Collection

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https://doi.org/10.12688/f1000research.11407.1
Opinion Article metrics
Four simple recommendations to encourage best practices in research software
[version 1; peer review: 3 approved]
Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutierrez, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll. Gelpí, Simon Gladman, Carole Goble, Montserrat González Ferreiro, Alejandra Gonzalez-Beltran, Philippa C. Griffin, Björn Grüning, Jonas Hagberg, Petr Holub, Rob Hooft, Jon Ison, Daniel S. Katz, Brane Leskošek, Federico López Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola Mulder, Yasset Perez-Riverol, Robert Pergl, Horst Pichler, Bernard Pope, Ferran Sanz, Maria V. Schneider, Victoria Stodden, Radosław Suchecki, Radka Svobodová Vařeková, Harry-Anton Talvik, Ilian Todorov, Andrew Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch
Peer Reviewers Roberto Di Cosmo; Gregory V. Wilson; Stefanie Betz
  • Funders
  • ELIXIR-EXCELERATE
  • EMBL-ABR
  • Netherlands eScience Center
  • CORBEL
  • Software Sustainability Institute
PUBLISHED 13 Jun 2017
https://doi.org/10.12688/f1000research.11429.1
Research Article metrics
Community and Code: Nine Lessons from Nine NESCent Hackathons
[version 1; peer review: 1 approved, 1 approved with reservations]
Arlin Stoltzfus, Michael Rosenberg, Hilmar Lapp, Aidan Budd, Karen Cranston, Enrico Pontelli, Shann Oliver, Rutger A. Vos
Peer Reviewers Eva Amsen; Cameron Neylon
  • Funder
  • National Evolutionary Synthesis Center
PUBLISHED 06 Jun 2017
https://doi.org/10.12688/f1000research.10964.2
Opinion Article metrics
Revised
hackseq: Catalyzing collaboration between biological and computational scientists via hackathon
[version 2; peer review: 2 approved]
hackseq Organizing Committee 2016
Peer Reviewers Kate L. Hertweck; Jiarong Guo
LATEST VERSION PUBLISHED 10 Apr 2017
https://doi.org/10.12688/f1000research.9821.1
Software Tool Article metrics
A guide and best practices for R/Bioconductor tool integration in Galaxy
[version 1; peer review: 1 approved, 1 approved with reservations]
Nitesh Turaga, Mallory A. Freeberg, Dannon Baker, John Chilton, Galaxy Team, Anton Nekrutenko, James Taylor
Peer Reviewers Paul A. Stewart and Dekai Rohlsen; Houtan Noushmehr and Tiago Silva
PUBLISHED 24 Nov 2016
https://doi.org/10.12688/f1000research.9206.1
Opinion Article metrics
Top 10 metrics for life science software good practices
[version 1; peer review: 2 approved]
Haydee Artaza, Neil Chue Hong, Manuel Corpas, Angel Corpuz, Rob W.W. Hooft, Rafael C. Jiménez, Brane Leskošek, Brett G. Olivier, Jan Stourac, Radka Svobodová Vařeková, Thomas Van Parys, Daniel Vaughan
Peer Reviewers Pedro L. Fernandes; Bruno Gaëta
PUBLISHED 16 Aug 2016
https://doi.org/10.12688/f1000research.3-62.v2
Commentary metrics
Revised
Software Carpentry: lessons learned
[version 2; peer review: 3 approved]
Greg Wilson
Peer Reviewers Juha Sorva; Philip Guo; Hilmar Lapp
LATEST VERSION PUBLISHED 28 Jan 2016
21-26 of 26 ARTICLES
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