Bioinformatics Education and Training Collection

Bioinformatics Education and Training Collection

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1-20 of 26 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.129958.4
Research Article metrics
Revised
The first released available genome of the common ice plant (Mesembryanthemum crystallinum L.) extended the research region on salt tolerance, C3-CAM photosynthetic conversion, and halophilism
[version 4; peer review: 2 approved, 1 approved with reservations]
Ryoma Sato, Yuri Kondo, Sakae Agarie
Peer Reviewers Qijie Guan; Xin-Guang Zhu; Zbigniew Miszalski
  • Funder
  • JSPS KAKENHI
LATEST VERSION PUBLISHED 04 Jan 2024
https://doi.org/10.12688/f1000research.128391.1
Research Article metrics
Evaluation of cytosine conversion methods for whole-genome DNA methylation profiling
[version 1; peer review: 2 not approved]
Shyaron Poudel, Brett Hale, Asela J. Wijeratne
Peer Reviewers Aaron John Stevens; Sadaruddin Chachar
  • Funders
  • Arkansas State University
  • Arkansas Biosciences Institute
PUBLISHED 07 Dec 2022
https://doi.org/10.12688/f1000research.54685.2
Opinion Article metrics
Revised
Introducing R as a smart version of calculators enables beginners to explore it on their own
[version 2; peer review: 3 approved]
Krishna Choudhary, Alexander R. Pico
Peer Reviewers Lex Nederbragt; Yasha Hasija; Rayna M Harris
  • Funders
  • UCSF Bakar Computational Health Sciences Institute
  • Gladstone Institutes
LATEST VERSION PUBLISHED 21 Jun 2022
https://doi.org/10.12688/f1000research.72808.2
Research Article metrics
Revised
Student biocuration projects as a learning environment
[version 2; peer review: 2 approved]
Katherine E. Thurlow, Ruth C. Lovering, Sandra De Miranda Pinheiro
Peer Reviewers Nicole A. Vasilevsky; Anna Delprato
  • Funders
  • National Institute for Health Research University College London Hospitals Biomedical Research Centre
  • Alzheimer’s Research UK
LATEST VERSION PUBLISHED 02 Feb 2022
https://doi.org/10.12688/f1000research.25413.2
Research Article metrics
Revised
Biocuration - mapping resources and needs
[version 2; peer review: 2 approved]
Alexandra Holinski, Melissa L. Burke, Sarah L. Morgan, Peter McQuilton, Patricia M. Palagi
Peer Reviewers Tanya Berardini; Luana Licata
  • Funder
  • ELIXIR
LATEST VERSION PUBLISHED 02 Dec 2020
https://doi.org/10.12688/f1000research.20244.2
Opinion Article metrics
Revised
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR
[version 2; peer review: 2 approved]
Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
Peer Reviewers Roland Krause; Loredana Le Pera and Allegra Via
  • Funders
  • Bundesministerium für Bildung und Forschung
  • Ministerium für Innovation, Wissenschaft und Forschung des Landes Nordrhein-Westfalen
LATEST VERSION PUBLISHED 11 Sep 2020
https://doi.org/10.12688/f1000research.20873.2
Opinion Article metrics
Revised
The why, when, and how of computing in biology classrooms
[version 2; peer review: 2 approved]
April M. Wright, Rachel S. Schwartz, Jamie R. Oaks, Catherine E. Newman, Sarah P. Flanagan
Peer Reviewers Tiffany Timbers; Thomas Kluyver
  • Funders
  • University of Canterbury
  • National Institute of Food and Agriculture
  • National Institute of General Medical Sciences
  • National Science Foundation
LATEST VERSION PUBLISHED 02 Mar 2020
https://doi.org/10.12688/f1000research.20408.1
Editorial metrics NOT PEER REVIEWED
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers
[version 1; peer review: not peer reviewed]
Sayane Shome, R. Gonzalo Parra, Nazeefa Fatima, Alexander Miguel Monzon, Bart Cuypers, Yumna Moosa, Nilson Da Rocha Coimbra, Juliana Assis, Carla Giner-Delgado, Handan Melike Dönertaş, Yesid Cuesta-Astroz, Geetha Saarunya, Imane Allali, Shruti Gupta, Ambuj Srivastava, Manisha Kalsan, Catalina Valdivia, Gabriel J. Olguin-Orellana, Sofia Papadimitriou, Daniele Parisi, Nikolaj Pagh Kristensen, Leonor Rib, Marouen Ben Guebila, Eugen Bauer, Gaia Zaffaroni, Amel Bekkar, Efejiro Ashano, Lisanna Paladin, Marco Necci, Nicolás N. Moreyra, Martin Rydén, Jordan Villalobos-Solís, Nikolaos Papadopoulos, Candice Rafael, Tülay Karakulak, Yasin Kaya, Yvonne Gladbach, Sandeep Kumar Dhanda, Nikolina Šoštarić, Aishwarya Alex, Dan DeBlasio, Farzana Rahman
  • Funder
  • International Society for Computational Biology
PUBLISHED 02 Sep 2019
https://doi.org/10.12688/f1000research.19320.1
Opinion Article metrics
Introduction to Genomic Analysis Workshop: A catalyst for engaging life-science researchers in high throughput analysis
[version 1; peer review: 2 approved]
Phillip A. Richmond, Wyeth W. Wasserman
Peer Reviewers Richard Fitzpatrick and Melanie I. Stefan; Michael Springer
  • Funders
  • Natural Sciences and Engineering Research Council
  • BC Children’s Hospital Research Institute
PUBLISHED 30 Jul 2019
https://doi.org/10.12688/f1000research.18357.1
Opinion Article metrics
Advancing the international data science workforce through shared training and education
[version 1; peer review: 1 approved, 1 approved with reservations]
John Van Horn, Sumiko Abe, José Luis Ambite, Teresa K. Attwood, Niall Beard, Louisa Bellis, Avnish Bhattrai, Alex Bui, Gully Burns, Lily Fierro, Jonathan Gordon, Jeffrey Grethe, Jeana Kamdar, Xiaoyu Lei, Kristina Lerman, Annette McGrath, Nicola Mulder, Caroline O'Driscoll, Crystal Stewart, Sonika Tyagi
Peer Reviewers Ariel Rokem; David N. Kennedy and Julianna F. Bates
  • Funder
  • National Institutes of Health
PUBLISHED 04 Mar 2019
https://doi.org/10.12688/f1000research.17693.1
Research Note metrics
Massive open online courses on biomedical informatics
[version 1; peer review: 2 not approved]
Cender Udai Quispe-Juli, Victor Hugo Moquillaza-Alcántara, Katherine Arapa-Apaza
Peer Reviewers Edward Meinert; Tharindu Liyanagunawardena
  • Funder
  • Fondo Nacional de Desarrollo Científico y Tecnológico
PUBLISHED 14 Feb 2019
https://doi.org/10.12688/f1000research.17739.1
Editorial metrics NOT PEER REVIEWED
Nurturing tomorrow’s leaders: The ISCB Student Council Symposia in 2018
[version 1; peer review: not peer reviewed]
Daniele Parisi, Gabriel J. Olguín-Orellana, Eli J. Draizen, Nilson Da Rocha Coimbra, Nikolaos Papadopoulos, Susanne Kirchen, Yvonne Saara Gladbach, Numrah Fadra, Nazeefa Fatima, Aishwarya Alex Namasivayam, Sayane Shome, Dan DeBlasio, Alexander M. Monzon, Farzana Rahman, R. Gonzalo Parra
  • Funder
  • International Society for Computational Biology
PUBLISHED 09 Jan 2019
https://doi.org/10.12688/f1000research.16516.1
Method Article metrics
Orchestrating a community-developed computational workshop and accompanying training materials
[version 1; peer review: 2 approved]
Sean Davis, Marcel Ramos, Lori Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron
Peer Reviewers Ewy Mathe; Kevin Blighe
  • Funders
  • Horizon 2020
  • National Cancer Institute
  • National Human Genome Research Institute
PUBLISHED 17 Oct 2018
https://doi.org/10.12688/f1000research.16310.1
Research Article metrics
Design and implementation of semester long project and problem based bioinformatics course
[version 1; peer review: 3 approved with reservations]
Geetha Saarunya, Bert Ely
Peer Reviewers Russell Schwartz; Mark A. Pauley; Allegra Via
PUBLISHED 25 Sep 2018
https://doi.org/10.12688/f1000research.13705.1
Opinion Article metrics
Matchmaking in Bioinformatics
[version 1; peer review: 2 approved]
Ewy Mathé, Ben Busby, Helen Piontkivska, Team of Developers
Peer Reviewers Robert M. Blumenthal; Guenter Tusch
  • Funder
  • National Institutes of Health
PUBLISHED 09 Feb 2018
https://doi.org/10.12688/f1000research.13463.1
Editorial metrics NOT PEER REVIEWED
Highlights of the second ISCB Student Council Symposium in Africa, 2017
[version 1; peer review: not peer reviewed]
Candice N. Rafael, Efejiro Ashano, Yumna Moosa, Sayane Shome, Dan DeBlasio
  • Funders
  • Gordon and Betty Moore Foundation
  • International Society for Computational Biology
  • National Institutes of Health
  • National Science Foundation
PUBLISHED 28 Dec 2017
https://doi.org/10.12688/f1000research.12332.1
Opinion Article metrics
The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training
[version 1; peer review: 2 approved]
Sarah L Morgan, Patricia M Palagi, Pedro L Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K Attwood, Allegra Via
Peer Reviewers Jason J. Williams; Kim T. Gurwitz
  • Funder
  • ELIXIR-EXCELERATE
PUBLISHED 24 Aug 2017
https://doi.org/10.12688/f1000research.10750.2
Review metrics
Revised
General guidelines for biomedical software development
[version 2; peer review: 2 approved]
Luis Bastiao Silva, Rafael C. Jimenez, Niklas Blomberg, José Luis Oliveira
Peer Reviewers João P. G. L. M.  Rodrigues; Victor Maojo
  • Funders
  • European Federation of Pharmaceutical Industries and Associations
  • Horizon 2020
LATEST VERSION PUBLISHED 12 Jul 2017
https://doi.org/10.12688/f1000research.11718.1
Opinion Article metrics
Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action
[version 1; peer review: 3 approved]
Aleksandra Pawlik, Celia W.G. van Gelder, Aleksandra Nenadic, Patricia M. Palagi, Eija Korpelainen, Philip Lijnzaad, Diana Marek, Susanna-Assunta Sansone, John Hancock, Carole Goble
Peer Reviewers Erin A. Becker; Anelda P. van der Walt and Juan Steyn; Laurent Gatto
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 03 Jul 2017
https://doi.org/10.12688/f1000research.11837.1
Opinion Article metrics
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
[version 1; peer review: 4 approved, 1 approved with reservations]
L. Larcombe, R. Hendricusdottir, T.K. Attwood, F. Bacall, N. Beard, L.J. Bellis, W.B. Dunn, J.M. Hancock, A. Nenadic, C. Orengo, B. Overduin, S-A Sansone, M. Thurston, M.R. Viant, C.L. Winder, C.A. Goble, C.P. Ponting, G. Rustici
Peer Reviewers Michelle D. Brazas; Patricia M. Palagi; Celia W.G. van Gelder; Nicola J. Mulder; Manuel Corpas
  • Funders
  • Horizon 2020
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 21 Jun 2017
1-20 of 26 ARTICLES
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