RPackage

RPackage

track_changes Track Tracking Be alerted when new articles are added in this gateway (manage your tracking alerts via your account) Stop tracking this gateway
Home Gateways RPackage
101-120 of 131 ARTICLES
Previous Next
 in 
https://doi.org/10.12688/f1000research.12512.1
Software Tool Article metrics
lakemorpho: Calculating lake morphometry metrics in R
[version 1; peer review: 2 approved]
Jeffrey Hollister, Jemma Stachelek
Peer Reviewers Samantha K. Oliver; Luke A. Winslow
PUBLISHED 21 Sep 2017
https://doi.org/10.12688/f1000research.11830.2
Software Tool Article metrics
Revised
CASAS: Cancer Survival Analysis Suite, a web based application
[version 2; peer review: 2 approved]
Manali Rupji, Xinyan Zhang, Jeanne Kowalski
Peer Reviewers Gang Han; Seon-Young Kim
  • Funders
  • Winship Cancer Institute of Emory University
  • National Cancer Institute
LATEST VERSION PUBLISHED 31 Jul 2017
https://doi.org/10.12688/f1000research.9259.2
Software Tool Article metrics
Revised
GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes
[version 2; peer review: 2 approved]
Evert van den Broek, Stef van Lieshout, Christian Rausch, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J.A. Fijneman, Sanne Abeln
Peer Reviewers Tobias Marschall; Angel Rubio
LATEST VERSION PUBLISHED 06 Jul 2017
https://doi.org/10.12688/f1000research.11997.1
Software Tool Article metrics
valr: Reproducible genome interval analysis in R
[version 1; peer review: 2 approved]
Kent A. Riemondy, Ryan M. Sheridan, Austin Gillen, Yinni Yu, Christopher G. Bennett, Jay R. Hesselberth
Peer Reviewers Robert A. Amezquita; Ryan K. Dale
  • Funders
  • U.S. National Library of Medicine
  • National Institutes of Health
  • Colorado Office of Economic Development and International Trade
  • BioFrontiers Institute, University of Colorado Boulder
  • University of Colorado
PUBLISHED 29 Jun 2017
https://doi.org/10.12688/f1000research.11317.1
Software Tool Article metrics
ogttMetrics: Data structures and algorithms for oral glucose tolerance tests
[version 1; peer review: 1 approved with reservations]
Benjamin J. Stubbs, Keith Frankston, Marcel Ramos, Nancy Laranjo, Frank M. Sacks, Vincent J. Carey
Peer Reviewers Antti Honkela
  • Funders
  • National Institute of Diabetes and Digestive and Kidney Diseases
  • National Cancer Institute
PUBLISHED 16 May 2017
https://doi.org/10.12688/f1000research.10742.2
Software Tool Article metrics
Revised
haploR: an R package for querying web-based annotation tools
[version 2; peer review: 3 approved]
Ilya Y. Zhbannikov, Konstantin Arbeev, Svetlana Ukraintseva, Anatoliy I. Yashin
Peer Reviewers Garrett M. Dancik; Claudia Vitolo and Estibaliz Gascon; Stephanie M. Gogarten
  • Funder
  • National Institute on Aging
LATEST VERSION PUBLISHED 15 May 2017
https://doi.org/10.12688/f1000research.9742.2
Software Tool Article metrics
Revised
whoishRisk – an R package to calculate WHO/ISH cardiovascular risk scores for all epidemiological subregions of the world
[version 2; peer review: 3 approved]
Dylan Collins, Joseph Lee, Niklas Bobrovitz, Constantinos Koshiaris, Alison Ward, Carl J. Heneghan
Peer Reviewers Raivo Kolde; Scott A. Chamberlain; Maria Suarez-Diez
LATEST VERSION PUBLISHED 08 Mar 2017
https://doi.org/10.12688/f1000research.7312.2
Research Article metrics
Revised
An adaptable toolkit to assess commercial fishery costs and benefits related to marine protected area network design
[version 2; peer review: 2 approved]
Rémi M. Daigle, Cristián J. Monaco, Ashley K. Elgin
Peer Reviewers Pedro Peres-Neto; Marco Andrello
LATEST VERSION PUBLISHED 22 Feb 2017
https://doi.org/10.12688/f1000research.9582.2
Software Tool Article metrics
Revised
Building pathway graphs from BioPAX data in R
[version 2; peer review: 3 approved, 1 approved with reservations]
Nirupama Benis, Dirkjan Schokker, Frank Kramer, Mari A. Smits, Maria Suarez-Diez
Peer Reviewers Lynn Fink; Stephen N. Floor; Hilary Ann Coller; Kyle Ellrott
LATEST VERSION PUBLISHED 12 Dec 2016
https://doi.org/10.12688/f1000research.8900.2
Method Article metrics
Revised
DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics
[version 2; peer review: 2 approved]
Malgorzata Nowicka, Mark D. Robinson
Peer Reviewers Alejandro Reyes; Robert Castelo
LATEST VERSION PUBLISHED 06 Dec 2016
https://doi.org/10.12688/f1000research.10232.1
Research Article metrics
Approaches to R education in Canadian universities
[version 1; peer review: 1 approved, 2 approved with reservations]
Michael A. Carson, Nathan Basiliko
Peer Reviewers Colin W. Rundel; Eliezer Gurarie; Luc F. Bussiere
PUBLISHED 30 Nov 2016
https://doi.org/10.12688/f1000research.9821.1
Software Tool Article metrics
A guide and best practices for R/Bioconductor tool integration in Galaxy
[version 1; peer review: 1 approved, 1 approved with reservations]
Nitesh Turaga, Mallory A. Freeberg, Dannon Baker, John Chilton, Galaxy Team, Anton Nekrutenko, James Taylor
Peer Reviewers Paul A. Stewart and Dekai Rohlsen; Houtan Noushmehr and Tiago Silva
PUBLISHED 24 Nov 2016
https://doi.org/10.12688/f1000research.7082.3
Software Tool Article metrics
Revised
EvolQG - An R package for evolutionary quantitative genetics
[version 3; peer review: 2 approved, 1 approved with reservations]
Diogo Melo, Guilherme Garcia, Alex Hubbe, Ana Paula Assis, Gabriel Marroig
Peer Reviewers Mark Grabowsky; David Houle; Charles Roseman
LATEST VERSION PUBLISHED 08 Nov 2016
https://doi.org/10.12688/f1000research.9357.2
Software Tool Article metrics
Revised
Genomic variant annotation workflow for clinical applications
[version 2; peer review: 2 approved]
Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, Niko Beerenwinkel
Peer Reviewers Christopher Southan; Ankush Sharma and Md. Sahidul Islam
LATEST VERSION PUBLISHED 24 Oct 2016
https://doi.org/10.12688/f1000research.6379.2
Software Tool Article metrics
Revised
regionReport: Interactive reports for region-level and feature-level genomic analyses
[version 2; peer review: 2 approved, 1 approved with reservations]
Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek
Peer Reviewers Timothy J. Triche Jr; Karthik Ram; David Robinson
LATEST VERSION PUBLISHED 29 Jun 2016
https://doi.org/10.12688/f1000research.8759.2
Software Tool Article metrics
Revised
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments
[version 2; peer review: 2 approved]
Aaron T. L. Lun, Malcolm Perry, Elizabeth Ing-Simmons
Peer Reviewers Douglas Phanstiel; Nicolas Servant
LATEST VERSION PUBLISHED 28 Jun 2016
https://doi.org/10.12688/f1000research.9022.1
Software Tool Article metrics
ddpcr: an R package and web application for analysis of droplet digital PCR data
[version 1; peer review: 2 approved]
Dean Attali, Roza Bidshahri, Charles Haynes, Jennifer Bryan
Peer Reviewers Timothy J. Triche Jr; Stephanie L. Hazlitt and Andy Teucher
PUBLISHED 17 Jun 2016
https://doi.org/10.12688/f1000research.8964.1
Software Tool Article metrics
RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
[version 1; peer review: 3 approved]
Alexandra Popa, Kevin Lebrigand, Agnes Paquet, Nicolas Nottet, Karine Robbe-Sermesant, Rainer Waldmann, Pascal Barbry
Peer Reviewers Olivier Namy and Pierre Bertin; Audrey M Michel; Ghislain Bidaut
PUBLISHED 09 Jun 2016
https://doi.org/10.12688/f1000research.8918.1
Research Note metrics
Decomposition of mutational context signatures using quadratic programming methods
[version 1; peer review: 1 approved, 1 approved with reservations]
Andy G. Lynch
Peer Reviewers Mohamed Helmy; Miguel Vazquez
PUBLISHED 07 Jun 2016
https://doi.org/10.12688/f1000research.8694.1
Software Tool Article metrics
IncucyteDRC: An R package for the dose response analysis of live cell imaging data
[version 1; peer review: 2 approved]
Philip J. Chapman, Dominic I. James, Amanda J. Watson, Gemma V. Hopkins, Ian D. Waddell, Donald J. Ogilvie
Peer Reviewers Guillaume Devailly; Clara Alsinet-Armengol
PUBLISHED 23 May 2016
101-120 of 131 ARTICLES
Previous Next
Gateway Areas
Sign In
If you've forgotten your password, please enter your email address below and we'll send you instructions on how to reset your password.

The email address should be the one you originally registered with F1000.
Email address not valid, please try again

You registered with F1000 via Google, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Google account password, please click here.

You registered with F1000 via Facebook, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Facebook account password, please click here.

Code not correct, please try again
Email us for further assistance.
Server error, please try again.