RPackage

RPackage

track_changes Track Tracking Be alerted when new articles are added in this gateway (manage your tracking alerts via your account) Stop tracking this gateway
Home Gateways RPackage
81-100 of 142 ARTICLES
Previous Next
 in 
https://doi.org/10.12688/f1000research.19310.1
Software Tool Article metrics
A new method for detecting abrupt shifts in time series
[version 1; peer review: 2 approved with reservations]
Chris A. Boulton, Timothy M. Lenton
Peer Reviewers Valerie N. Livina; Sonia Kéfi
  • Funder
  • Natural Environment Research Council
PUBLISHED 28 May 2019
https://doi.org/10.12688/f1000research.18636.1
Method Article metrics
A Bioconductor workflow for the Bayesian analysis of spatial proteomics
[version 1; peer review: 1 approved, 2 approved with reservations]
Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul D.W. Kirk, Laurent Gatto
Peer Reviewers Pierre M. Jean Beltran; Susan Holmes; Angus Lamond and Alejandro Brenes Murillo
  • Funders
  • Medical Research Council
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 11 Apr 2019
https://doi.org/10.12688/f1000research.17548.2
Software Tool Article metrics
Revised
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python
[version 2; peer review: 2 approved]
Klara Kaleb, Alex Warwick Vesztrocy, Adrian M. Altenhoff, Christophe Dessimoz
Peer Reviewers Bastian Greshake Tzovaras and Ngoc-Vinh Tran; Laurent Gatto
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • University College London
  • Swiss State Secretariat for Education
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 29 Mar 2019
https://doi.org/10.12688/f1000research.17139.3
Software Tool Article metrics
Revised
Radtools: R utilities for convenient extraction of medical image metadata
[version 3; peer review: 2 approved]
Pamela H. Russell, Debashis Ghosh
Peer Reviewers Andrey Fedorov; Volker Schmid
  • Funder
  • Cancer Center, University of Colorado
LATEST VERSION PUBLISHED 25 Mar 2019
https://doi.org/10.12688/f1000research.16198.2
Software Tool Article metrics
Revised
scClustViz – Single-cell RNAseq cluster assessment and visualization
[version 2; peer review: 2 approved]
Brendan T. Innes, Gary D. Bader
Peer Reviewers Martin Hemberg and Tallulah Andrews; Michael Steinbaugh
  • Funder
  • Canada First Research Excellence Fund
LATEST VERSION PUBLISHED 12 Mar 2019
https://doi.org/10.12688/f1000research.17669.1
Software Tool Article metrics
shiny-pred: a server for the prediction of protein disordered regions
[version 1; peer review: 1 approved with reservations, 1 not approved]
Mauricio Oberti, Iosif Vaisman
Peer Reviewers Jinbo Xu; Appadurai Rajeswari and Anand Srivastava
PUBLISHED 28 Feb 2019
https://doi.org/10.12688/f1000research.15949.2
Software Tool Article metrics
Revised
The Mega2R package: R tools for accessing and processing genetic data in common formats
[version 2; peer review: 3 approved]
Robert V. Baron, Justin R. Stickel, Daniel E. Weeks
Peer Reviewers Dajiang J. Lui; Alejandro Q. Nato, Jr.; Derek Gordon
  • Funders
  • The University of Pittsburgh
  • National Institutes of Health
LATEST VERSION PUBLISHED 25 Feb 2019
https://doi.org/10.12688/f1000research.17916.1
Method Article metrics
Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
[version 1; peer review: 1 approved, 2 approved with reservations]
Kimon Froussios, Kira Mourão, Gordon Simpson, Geoffrey J. Barton, Nicholas Schurch
Peer Reviewers Sophie Shaw; James P. B. Lloyd; Michael I. Love
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 24 Feb 2019
https://doi.org/10.12688/f1000research.18002.1
Software Tool Article metrics
Epidemic curves made easy using the R package incidence
[version 1; peer review: 1 approved, 2 approved with reservations]
Zhian N. Kamvar, Jun Cai, Juliet R.C. Pulliam, Jakob Schumacher, Thibaut Jombart
Peer Reviewers Benjamin M. Bolker; Quirine ten Bosch; Bertrand Sudre
  • Funders
  • Global Challenges Research Fund (GCRF)
  • United Kingdom Department of Health and Social Care
  • National Institute for Health Research - Health Protection Research Unit for Modelling Methodology
PUBLISHED 31 Jan 2019
https://doi.org/10.12688/f1000research.16409.2
Software Tool Article metrics
Revised
gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2
[version 2; peer review: 2 approved]
Jesper L.V. Maag
Peer Reviewers Helder I. Nakaya; Saskia Freytag
LATEST VERSION PUBLISHED 20 Nov 2018
https://doi.org/10.12688/f1000research.16680.1
Software Tool Article metrics
ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations
[version 1; peer review: 1 approved, 2 approved with reservations]
Gaurav S. Kandlikar, Zachary J. Gold, Madeline C. Cowen, Rachel S. Meyer, Amanda C. Freise, Nathan J.B. Kraft, Jordan Moberg-Parker, Joshua Sprague, David J. Kushner, Emily E. Curd
Peer Reviewers Tristan Cordier; Holly M. Bik; Niklaus J. Grünwald and Zach Foster
  • Funders
  • University of California President’s Research Catalyst Awards
  • National Science Foundation
PUBLISHED 01 Nov 2018
https://doi.org/10.12688/f1000research.14492.2
Software Tool Article metrics
Revised
epicontacts: Handling, visualisation and analysis of epidemiological contacts
[version 2; peer review: 2 approved, 1 approved with reservations]
VP Nagraj, Nistara Randhawa, Finlay Campbell, Thomas Crellen, Bertrand Sudre, Thibaut Jombart
Peer Reviewers Melissa A. Rolfes; Peter Adebayo Adewuyi; Josie Athens
LATEST VERSION PUBLISHED 11 Oct 2018
https://doi.org/10.12688/f1000research.13196.2
Method Article metrics
Revised
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR
[version 2; peer review: 2 approved, 1 approved with reservations]
Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth
Peer Reviewers Simon Andrews; James W. MacDonald; Peter F.  Hickey
  • Funders
  • Victorian State Government
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 08 Oct 2018
https://doi.org/10.12688/f1000research.15398.3
Method Article metrics
Revised
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification
[version 3; peer review: 3 approved]
Michael I. Love, Charlotte Soneson, Rob Patro
Peer Reviewers Kristoffer Vitting-Seerup and Malte Thodberg; Alicia Oshlack and Marek Cmero; Nick Schurch
  • Funders
  • National Institute of Environmental Health Sciences
  • National Cancer Institute
  • National Human Genome Research Institute
  • National Science Foundation
LATEST VERSION PUBLISHED 01 Oct 2018
https://doi.org/10.12688/f1000research.14013.2
Software Tool Article metrics
Revised
Taxa: An R package implementing data standards and methods for taxonomic data
[version 2; peer review: 4 approved]
Zachary S.L. Foster, Scott Chamberlain, Niklaus J. Grünwald
Peer Reviewers Ethan P. White and Kristina Riemer; C. Titus Brown and Taylor Reiter; Damiano Oldoni and Peter Desmet; Holly M. Bik
  • Funders
  • Agricultural Research Service
  • rOpenSci
LATEST VERSION PUBLISHED 11 Sep 2018
https://doi.org/10.12688/f1000research.16047.1
Software Tool Article metrics
methyvim: Targeted, robust, and model-free differential methylation analysis in R
[version 1; peer review: 1 approved with reservations, 2 not approved]
Nima S. Hejazi, Rachael V. Phillips, Alan E. Hubbard, Mark J. van der Laan
Peer Reviewers Peter F.  Hickey; Jimmy Breen and Nader Aryamanesh; Nandita Mitra and Ted Westling
  • Funders
  • National Institute of Environmental Health Sciences
  • U.S. National Library of Medicine
PUBLISHED 07 Sep 2018
https://doi.org/10.12688/f1000research.15858.1
Software Tool Article metrics
Visualizing balances of compositional data: A new alternative to balance dendrograms
[version 1; peer review: 2 approved]
Thomas P. Quinn
Peer Reviewers Vera Pawlowsky-Glahn and Juan José Egozcue; Marc Noguera-Julian
PUBLISHED 14 Aug 2018
https://doi.org/10.12688/f1000research.13925.3
Software Tool Article metrics
Revised
BED: a Biological Entity Dictionary based on a graph data model
[version 3; peer review: 2 approved]
Patrice Godard, Jonathan van Eyll
Peer Reviewers Denise Slenter and Martina M. Summer-Kutmon; T. Ian Simpson
  • Funder
  • UCB Pharma
LATEST VERSION PUBLISHED 19 Jul 2018
https://doi.org/10.12688/f1000research.13511.3
Method Article metrics
Revised
netSmooth: Network-smoothing based imputation for single cell RNA-seq
[version 3; peer review: 2 approved]
Jonathan Ronen, Altuna Akalin
Peer Reviewers Fernando J. Calero-Nieto and Fiona Kathryn Hamey; Siddharth Dey
  • Funder
  • Helmholtz-Gemeinschaft
LATEST VERSION PUBLISHED 10 Jul 2018
https://doi.org/10.12688/f1000research.10411.2
Software Tool Article metrics
Revised
A Bioconductor workflow for processing and analysing spatial proteomics data
[version 2; peer review: 2 approved]
Lisa M. Breckels, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto
Peer Reviewers Leonard J. Foster; Daniel J. Stekhoven
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 03 Jul 2018
81-100 of 142 ARTICLES
Previous Next
Gateway Areas
Sign In
If you've forgotten your password, please enter your email address below and we'll send you instructions on how to reset your password.

The email address should be the one you originally registered with F1000.
Email address not valid, please try again

You registered with F1000 via Google, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Google account password, please click here.

You registered with F1000 via Facebook, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Facebook account password, please click here.

Code not correct, please try again
Email us for further assistance.
Server error, please try again.