Machine learning: life sciences

Machine learning: life sciences

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1-20 of 26 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.110608.1
Research Article metrics
Remote sensing and machine learning for yield prediction of lowland paddy crops
[version 1; peer review: 1 approved, 1 not approved]
Lala Septem Riza, Afina Hadaina Yudianita, Eki Nugraha, Lili Somantri, Imas Sukaesih Sitanggang, Khyrina Airin Fariza Abu Samah, Shah Nazir
Peer Reviewers Daniel Peralta; Attila Nagy
PUBLISHED 21 Jun 2022
https://doi.org/10.12688/f1000research.18636.1
Method Article metrics
A Bioconductor workflow for the Bayesian analysis of spatial proteomics
[version 1; peer review: 1 approved, 2 approved with reservations]
Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul D.W. Kirk, Laurent Gatto
Peer Reviewers Pierre M. Jean Beltran; Susan Holmes; Angus Lamond and Alejandro Brenes Murillo
  • Funders
  • Medical Research Council
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 11 Apr 2019
https://doi.org/10.12688/f1000research.10411.2
Software Tool Article metrics
Revised
A Bioconductor workflow for processing and analysing spatial proteomics data
[version 2; peer review: 2 approved]
Lisa M. Breckels, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto
Peer Reviewers Leonard J. Foster; Daniel J. Stekhoven
  • Funders
  • Wellcome Trust
  • Biotechnology and Biological Sciences Research Council
LATEST VERSION PUBLISHED 03 Jul 2018
https://doi.org/10.12688/f1000research.12947.3
Software Tool Article metrics
Revised
PPInfer: a Bioconductor package for inferring functionally related proteins using protein interaction networks
[version 3; peer review: 1 approved, 1 approved with reservations]
Dongmin Jung, Xijin Ge
Peer Reviewers Cathy H. Wu and Karen E. Ross; Helen V. Cook
  • Funder
  • National Science Foundation
LATEST VERSION PUBLISHED 12 Mar 2018
https://doi.org/10.12688/f1000research.11905.2
Method Article metrics
Revised
Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria
[version 2; peer review: 3 approved]
Sereina Riniker, Gregory A. Landrum, Floriane Montanari, Santiago D. Villalba, Julie Maier, Johanna M. Jansen, W. Patrick Walters, Anang A. Shelat
Peer Reviewers David Ryan  Koes; Matthew P. Baumgartner; Andrea Volkamer
  • Funder
  • Novartis Institutes for BioMedical Research
LATEST VERSION PUBLISHED 19 Feb 2018
https://doi.org/10.12688/f1000research.13016.2
Review metrics
Revised
The rise and fall of machine learning methods in biomedical research
[version 2; peer review: 2 approved]
Hashem Koohy
Peer Reviewers Alex Bateman; Konrad Förstner
  • Funder
  • Medical Research Council
LATEST VERSION PUBLISHED 02 Jan 2018
https://doi.org/10.12688/f1000research.9893.2
Software Tool Article metrics
Revised
exprso: an R-package for the rapid implementation of machine learning algorithms
[version 2; peer review: 2 approved]
Thomas Quinn, Daniel Tylee, Stephen Glatt
Peer Reviewers Dariusz Plewczynski and Julian Zubek; Henry Löffler-Wirth
LATEST VERSION PUBLISHED 06 Dec 2017
https://doi.org/10.12688/f1000research.12914.1
Research Note metrics
Detection of illicit online sales of fentanyls via Twitter
[version 1; peer review: 3 approved]
Tim K. Mackey, Janani Kalyanam
Peer Reviewers Marvin D. Shepherd; Róbert G. Vida; Emilio Ferrara
PUBLISHED 02 Nov 2017
https://doi.org/10.12688/f1000research.12892.1
Study Protocol metrics
Development of a deep neural network derived from contours defined by consensus-based guidelines for automatic target segmentation in hepatocellular carcinoma radiotherapy: A study protocol
[version 1; peer review: 1 approved, 1 approved with reservations]
Jiandong Zhao, Jiazhou Wang, Mingxia Cheng
Peer Reviewers Laura A. Dawson; Sergio Casciaro
  • Funder
  • Shangfang Health Inc.
PUBLISHED 01 Nov 2017
https://doi.org/10.12688/f1000research.12693.1
Correspondence metrics
Unintended consequences of machine learning in medicine?
[version 1; peer review: 2 approved]
Laura McDonald, Sreeram V. Ramagopalan, Andrew P. Cox, Mustafa Oguz
Peer Reviewers Arturo Gonzalez-Izquierdo, Maria Pikoula and Spiros Denaxas; Hugo Schnack and Zimbo Boudewijns
PUBLISHED 19 Sep 2017
https://doi.org/10.12688/f1000research.8231.3
Method Article metrics
Revised
Heterogeneous ensembles for predicting survival of metastatic, castrate-resistant prostate cancer patients
[version 3; peer review: 2 approved, 1 approved with reservations]
Sebastian Pölsterl, Pankaj Gupta, Lichao Wang, Sailesh Conjeti, Amin Katouzian, Nassir Navab
Peer Reviewers Donna P. Ankerst; Jinfeng Xiao; Amber L Simpson
LATEST VERSION PUBLISHED 06 Jul 2017
https://doi.org/10.12688/f1000research.8996.2
Study Protocol metrics
Revised
Automated analysis of retinal imaging using machine learning techniques for computer vision
[version 2; peer review: 2 approved]
Jeffrey De Fauw, Pearse Keane, Nenad Tomasev, Daniel Visentin, George van den Driessche, Mike Johnson, Cian O Hughes, Carlton Chu, Joseph Ledsam, Trevor Back, Tunde Peto, Geraint Rees, Hugh Montgomery, Rosalind Raine, Olaf Ronneberger, Julien Cornebise
Peer Reviewers Yit Yang; Sandrine Zweifel
  • Funder
  • DeepMind
LATEST VERSION PUBLISHED 22 Jun 2017
https://doi.org/10.12688/f1000research.9417.3
Research Note metrics
Revised
Predicting Outcomes of Hormone and Chemotherapy in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) Study by Biochemically-inspired Machine Learning
[version 3; peer review: 2 approved]
Eliseos J. Mucaki, Katherina Baranova, Huy Q. Pham, Iman Rezaeian, Dimo Angelov, Alioune Ngom, Luis Rueda, Peter K. Rogan
Peer Reviewers Elana J. Fertig; Chun-Wei Tung
LATEST VERSION PUBLISHED 12 May 2017
https://doi.org/10.12688/f1000research.10529.2
Research Article metrics
Revised
Systematic assessment of multi-gene predictors of pan-cancer cell line sensitivity to drugs exploiting gene expression data
[version 2; peer review: 2 approved]
Linh Nguyen, Cuong C Dang, Pedro J. Ballester
Peer Reviewers Marc Poirot; Ronnie Alves
  • Funders
  • Vietnam National International Development
  • A*MIDEX
LATEST VERSION PUBLISHED 14 Mar 2017
https://doi.org/10.12688/f1000research.10114.3
Research Note metrics
Revised
Optimal threshold estimation for binary classifiers using game theory
[version 3; peer review: 3 approved]
Ignacio Enrique Sanchez
Peer Reviewers Pieter Meysman; Luis Diambra; Marcel Brun and Arjen ten Have
LATEST VERSION PUBLISHED 08 Feb 2017
https://doi.org/10.12688/f1000research.7217.3
Research Article metrics
Revised
Machine learning models identify molecules active against the Ebola virus in vitro
[version 3; peer review: 2 approved]
Sean Ekins, Joel S. Freundlich, Alex M. Clark, Manu Anantpadma, Robert A. Davey, Peter Madrid
Peer Reviewers Sanja Glisic; Sandeep Chakraborty
LATEST VERSION PUBLISHED 17 Jan 2017
https://doi.org/10.12688/f1000research.10419.1
Research Article metrics
Measuring the relative importance of different agricultural inputs to global and regional crop yield growth since 1975
[version 1; peer review: 2 approved with reservations]
Erik Nelson, Clare Bates Congdon
Peer Reviewers Timothy S Thomas; Nathaniel D Mueller
PUBLISHED 29 Dec 2016
https://doi.org/10.12688/f1000research.8628.1
Method Article metrics
Predicting survival time for metastatic castration resistant prostate cancer: An iterative imputation approach
[version 1; peer review: 2 approved, 1 approved with reservations]
Detian Deng, Yu Du, Zhicheng Ji, Karthik Rao, Zhenke Wu, Yuxin Zhu, R. Yates Coley
Peer Reviewers Devin C. Koestler; Ruoqing Zhu; C Jason Liang and Wenjuan Gu
PUBLISHED 16 Nov 2016
https://doi.org/10.12688/f1000research.9525.1
Study Protocol metrics PEER REVIEW DISCONTINUED
Applying machine learning to automated segmentation of head and neck tumour volumes and organs at risk on radiotherapy planning CT and MRI scans
[version 1; peer review: 1 approved with reservations]
Carlton Chu, Jeffrey De Fauw, Nenad Tomasev, Bernardino Romera Paredes, Cían Hughes, Joseph Ledsam, Trevor Back, Hugh Montgomery, Geraint Rees, Rosalind Raine, Kevin Sullivan, Syed Moinuddin, Derek D'Souza, Olaf Ronneberger, Ruheena Mendes, Julien Cornebise
Peer Reviewers Yuan Feng
PUBLISHED 30 Aug 2016
https://doi.org/10.12688/f1000research.9075.1
Research Article metrics
Centromere detection of human metaphase chromosome images using a candidate based method
[version 1; peer review: 2 approved with reservations]
Akila Subasinghe, Jagath Samarabandu, YanXin Li, Ruth Wilkins, Farrah Flegal, Joan H. M. Knoll, Peter K. Rogan
Peer Reviewers Thomas Boudier; Tanvi Arora
PUBLISHED 01 Jul 2016
1-20 of 26 ARTICLES
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