EMBL-EBI
Featured Article
Opinion Article
metrics
Top 10 metrics for life science software good practices
[version 1; peer review: 2 approved]
Peer Reviewers
Invited
Software Tool Article
metrics
ENA Source Attribute Helper: An Application Programming Interface to facilitate accurate reference to biological source data
[version 1; peer review: 1 approved, 1 not approved]
Peer Reviewers
Sujeevan Ratnasingham;
Begoña Aguado and Sandra Gonzalez
- Funder
- Horizon 2020 Research and Innovation Action
Opinion Article
metrics
Revised
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
[version 2; peer review: 2 approved]
Peer Reviewers
Boas Pucker and Alenka Hafner;
Micha M. Bayer
- Funders
- ELIXIR
- Bundesministerium für Bildung und Forschung
- Horizon 2020 Framework Programme
Case Study
metrics
IT Service management system for EMBL’s European Bioinformatics Institute’s IT department
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Álvaro López García;
Muhammad Hafizhuddin Hilman
Case Study
metrics
Data protection record of processing activities and privacy notice generator toolkit by EMBL’s European Bioinformatics Institute
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Mikael Linden;
Harshvardhan Pandit
Review
metrics
Approaches for containerized scientific workflows in cloud environments with applications in life science
[version 1; peer review: 2 not approved]
Peer Reviewers
Maciej Malawski;
Roberto Vera Alvarez
- Funders
- Nordic e-Infrastructure Collaboration (NeIC)
- Swedish Foundation for Strategic Research
- Åke Wiberg Foundation
- European Commission's Horizon 2020 programme
- Swedish Research Council FORMAS
- Swedish e-Science Research Centre (SeRC)
Editorial
metrics
NOT PEER REVIEWED
Highlights from the 16th International Society for Computational Biology Student Council Symposium 2020
[version 1; peer review: not peer reviewed]
Method Article
metrics
Peer Reviewers
Michael Reich;
Caroline C. Friedel
- Funders
- Netherlands Organisation for Scientific Research (NWO)
- Deutsche Stiftung für Herzforschung
- United States National Science Foundation Graduate Research Fellowship Program (NSF-GRFP)
- Google LLC
Research Article
metrics
Peer Reviewers
Tanya Berardini;
Luana Licata
- Funder
- ELIXIR
Research Article
metrics
Annotation and curation of human genomic variations: an ELIXIR Implementation Study
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Lina Ma;
Osamu Ogasawara
- Funders
- ELIXIR
- Imperial College London
- European Molecular Biology Laboratory
Method Article
metrics
Modelling structural rearrangements in proteins using Euclidean distance matrices
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Sergey Ovchinnikov;
Henry Wolkowicz and Haesol Im
- Funder
- European Molecular Biology Laboratory
Software Tool Article
metrics
Revised
Biobtree: A tool to search and map bioinformatics identifiers and special keywords
[version 4; peer review: 2 approved]
Peer Reviewers
Maxim N. Shokhirev;
Samuel Lampa
Opinion Article
metrics
An intrinsically disordered proteins community for ELIXIR
[version 1; peer review: 2 approved]
Peer Reviewers
Iva Pritisanac and Julie Forman-Kay;
Osman Ugur Sezerman
- Funders
- Vetenskapsrådet
- BBSRC
- European Molecular Biology Laboratory
- Carlsberg Foundation Distinguished Fellowship
- National Institutes of Health
- Israel I-CORE Project
- ELIXIR
- Danmarks Grundforskningsfond
- Instruct-ERIC
- Swiss Federal Government
- Marie Skłodowska-Curie
- COST Action BM1405 NGP-net
- Wellcome Trust
Research Article
metrics
Understanding life sciences data curation practices via user research
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Lynette Hirschman;
Cecilia N. Arighi
- Funder
- European Commission
Opinion Article
metrics
Revised
Recommendations for the packaging and containerizing of bioinformatics software
[version 2; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Ka Yee Yeung and Daniel Kristiyanto;
Monther Alhamdoosh;
Evan Floden
- Funders
- Horizon 2020
- National Institutes of Health
Method Article
metrics
Rapid identification of novel protein families using similarity searches
[version 1; peer review: 2 approved]
Peer Reviewers
Daniel J. Rigden;
Desmond G Higgins
- Funder
- European Molecular Biology Laboratory
Opinion Article
metrics
Revised
The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies
[version 2; peer review: 2 approved]
Peer Reviewers
Enrico Lavezzo and Giorgio Palù;
Jason C. Kwong
- Funder
- European Commission
Opinion Article
metrics
Revised
Best practice data life cycle approaches for the life sciences
[version 2; peer review: 2 approved]
Peer Reviewers
Johannes Starlinger;
Sven Nahnsen
- Funders
- Bioplatforms Australia
- University of Melbourne
Method Article
metrics
Gene Unprediction with Spurio: A tool to identify spurious protein sequences
[version 1; peer review: 2 approved]
Peer Reviewers
Arne Elofsson;
Daniel H. Haft
- Funder
- European Molecular Biology Laboratory
Research Note
metrics
Improving communication for interdisciplinary teams working on storage of digital information in DNA
[version 1; peer review: 2 approved]
Peer Reviewers
Robert Grass;
Jeffrey R. Sampson
- Funders
- European Molecular Biology Laboratory
- European Bioinformatics Institute
- Biotechnology and Biological Sciences Research Council
Opinion Article
metrics
Peer Reviewers
Charles F. Burant;
Carl Brunius;
Emmanuel Mikros
- Funder
- Horizon 2020 Framework Programme