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https://doi.org/10.12688/f1000research.164583.2
Software Tool Article
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Revised
Assembly and quantification of transcripts from noisy long reads with NIFFLR
[version 2; peer review: 1 approved with reservations, 2 not approved]
Alina Guo,
Mihaela Pertea,
Aleksey V Zimin
Peer Reviewers
Colin Dewey;
Fairlie Reese;
Yuan Gao
- Funders
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Directorate for Biological Sciences
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NIH
LATEST VERSION PUBLISHED 03 Dec 2025
https://doi.org/10.12688/f1000research.146123.2
Brief Report
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Maria Landherr,
Iuliia Polina,
Michael W. Cypress,
Brian Rhee,
Kye-Im Jeon,
Sanjana Chandran,
Isabel Chaput,
Bridget Nieto,
Young Min Bae,
Bong Sook Jhun,
Jin O-Uchi
Peer Reviewers
Julian Leibowitz and Sarisa Na Pombejra;
Wei Liu
- Funders
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Institute of Engineering in Medicine at University of Minnesota
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American Heart Association
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National Heart, Lung, and Blood Institute
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Office of Academic Clinical Affairs at University of Minnesota
LATEST VERSION PUBLISHED 22 Nov 2025
https://doi.org/10.12688/f1000research.166678.2
Research Article
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Defrin Defrin,
Arif Birru,
Kevin Cuandra,
Ratna Puspita,
I Widnyana,
Nasya Aqilah,
Arzita Fadhilla,
Winka Suwardjo,
Amanda Amalia,
Kalaj Haq,
Tirza Amaris,
Feroz Aldino,
Shabrina Ekitasari,
Bernice Sirait,
Nathania Kristaningtyas,
Rizka Wilanda,
Made Ananda
Peer Reviewers
Aldi Tamara Rahman;
Norbertus Marcell Prayogi
LATEST VERSION PUBLISHED 06 Nov 2025
https://doi.org/10.12688/f1000research.170824.1
Case Study
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Rania Gargouri,
Nihel Ammous-Boukhris,
Ines Maaloul,
Imen Chabchoub,
Mariem Jabeur,
Wiem Feki,
Selma Charfeddine,
Raja Mokdad-Gargouri,
Leila Abid,
Lamia Gargouri
Peer Reviewers
Oscar Campuzano
PUBLISHED 28 Oct 2025
https://doi.org/10.12688/f1000research.131600.2
Genome Note
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Feiyun Tu,
Xiaodan Hou,
Qiujie Lu,
Xiaofei Zhai
Peer Reviewers
Michael Allen;
Perinçek Seçkinozan Şeker;
Kai He
- Funder
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Natural Science Foundation of Hainan Province
LATEST VERSION PUBLISHED 20 Oct 2025
https://doi.org/10.12688/f1000research.168556.1
Research Article
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Pouria Mosaddeghi,
Mitra Farahmandnejad,
Mohammad M. Zarshenas
Peer Reviewers
Raquel Garza;
Patricia A. Thibault
- Funder
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Shiraz University of Medical Sciences
PUBLISHED 10 Oct 2025
https://doi.org/10.12688/f1000research.125877.3
Research Article
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Cui Jiang,
Sara Gonzalez-Anton,
Xiaomeng Li,
Emma Mi,
Lingzhi Wu,
Hailin Zhao,
Ge Zhang,
Aiping Lu,
Cristina Lo Celso,
Daqing Ma
Peer Reviewers
Koichi Yuki;
Paul M Maciocia and Jongwon Yoon;
Victor H. Villar Cortes
- Funders
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Cancer Research UK
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UK and European Research Council
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Royal College of Anaesthetists
LATEST VERSION PUBLISHED 09 Oct 2025
https://doi.org/10.12688/f1000research.145171.3
Research Article
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Michelle Piquet,
David A Ruddy,
Viviana Cremasco,
Jonathan Chang
Peer Reviewers
Sanjiv Luther;
Christopher McGinnis
LATEST VERSION PUBLISHED 07 Oct 2025
https://doi.org/10.12688/f1000research.163776.1
Research Article
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Ariya Khamwut,
Bumpenporn Sanannam,
Suthida Visedthorn,
Pavit Klomkliew,
Watthanachai Jumpathong,
Pornchai Kaewsapsak,
Prangwalai Chanchaem,
Pavaret Sivapornnukul,
Kridsana Chantanakat,
Chinachote Teerapakpinyo,
Sutima Luangdilok,
Nattanan Panjaworayan T-Thienprasert,
Sunchai Payungporn
Peer Reviewers
Saurabh Gupta
- Funders
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Research Grants for Talented Mid-Career Researchers, the National Research Council of Thailand
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Ratchadapisek Somphot Fund for Postdoctoral Fellowship, Chulalongkorn University
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Ratchadapisek Sompot Fund, Faculty of Medicine, Chulalongkorn University
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Thailand Science Research and Innovation Fund, Chulalongkorn University
PUBLISHED 06 Oct 2025
https://doi.org/10.12688/f1000research.163212.2
Data Note
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Monica Pinoli,
Michele Terzaghi,
Franca Marino,
Cristoforo Comi,
Maurizio Versino,
Marco Cosentino
Peer Reviewers
Tommaso Schirinzi;
Adawiya J. Haider
LATEST VERSION PUBLISHED 06 Oct 2025
https://doi.org/10.12688/f1000research.169014.1
Systematic Review
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Tao Guo,
Katrin Deinhardt,
Yihua Wang
Peer Reviewers
Debmalya Sengupta
- Funder
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China Scholarship Council
PUBLISHED 01 Oct 2025
https://doi.org/10.12688/f1000research.168181.1
Research Article
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AWAITING PEER REVIEW
Heather Mercer,
Aiswarya Mukundan Nair,
Ayesha Tariq,
Helen Piontkivska
Peer Reviewers
Invited
- Funders
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The Brain Health Institute and the Healthy Communities Research Institute of Kent State University
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The David J. Mlynar Fund for Research on Huntington's Disease
PUBLISHED 29 Sep 2025
https://doi.org/10.12688/f1000research.169688.1
Research Article
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AWAITING PEER REVIEW
Karar Haider,
Yassir Mustafa Kamal Al Mulla Hummadi,
Rihab Muhamad Guaim,
Mutaz Ahmeid
Peer Reviewers
Invited
PUBLISHED 22 Sep 2025
https://doi.org/10.12688/f1000research.127413.2
Research Article
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Asadullah Asadullah,
Abdul Hafid Bajamal,
Muhammad Arifin Parenrengi,
Agus Turchan,
Budi Utomo,
I Ketut Sudiana,
Eko Agus Subagio
Peer Reviewers
Mawaddah Ar Rochmah;
Cafer Ikbal Gulsever;
Xue Yao
LATEST VERSION PUBLISHED 22 Sep 2025
https://doi.org/10.12688/f1000research.133145.2
Research Article
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Nada S. Shaker,
Hayder B. Sahib,
Zeena A. Hussein,
Nibras J. Tahseen
Peer Reviewers
Dr. Amany Ghazy;
Fan Jiang;
Ahmed Mahmood
LATEST VERSION PUBLISHED 10 Sep 2025
https://doi.org/10.12688/f1000research.166556.1
Research Article
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Sarmad M.H. Zeiny,
Ali K. Al-Shalchy,
Saad Hasan Mohammed Ali,
Shakir H. Mohammed Al-Alwany,
Athraa Y. Al-Hijazi
Peer Reviewers
Raziye Piranlioglu and Emerenziana Runco;
Lucia E. Azuara-Alvarez and Giovanni Palomino Vizcaino
PUBLISHED 03 Sep 2025
https://doi.org/10.12688/f1000research.163596.2
Method Article
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Jan Schulze,
Sarah Barnett,
Liam Shaw,
Anne Herrmann,
Harish Poptani,
Doris M Rassl,
Alexander Haragan,
Michael Shackcloth,
Joseph J Sacco,
Judy M Coulson
Peer Reviewers
Ulrich Jarry;
Stuart A. Clayton
- Funders
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National Centre for the Replacement Refinement and Reduction of Animals in Research
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North West Cancer Research
LATEST VERSION PUBLISHED 14 Aug 2025
https://doi.org/10.12688/f1000research.151954.2
Research Article
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Zina Ali Daily,
Batool Hassan Al-Ghurabi
Peer Reviewers
Athraa Ali Mahmood;
Paras Ahmad;
Snophia Suresh
LATEST VERSION PUBLISHED 14 Jul 2025
https://doi.org/10.12688/f1000research.163152.1
Research Article
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Eva Kohnert,
Clemens Kreutz
Peer Reviewers
Aaron W Miller;
Graziano Pesole and Giuseppe Defazio
PUBLISHED 25 Jun 2025
https://doi.org/10.12688/f1000research.158944.2
Research Article
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Zaid Abdul-Majeed,
Mohammed Qasim Yahya Malallah A. Al-Atrakji
Peer Reviewers
Suraj N Mali;
Vishal Dubey;
Vijayakumar A. R
LATEST VERSION PUBLISHED 10 Jun 2025