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 in 
https://doi.org/10.12688/f1000research.173746.3
Research Article metrics
Revised
Effect of Small Nucleolar RNA H/ACA Box 64 (SNORA64) on Apoptosis Regulator Genes in Pancreatic Cancer in Vitro
[version 3; peer review: 3 approved, 1 approved with reservations]
Rana Alfardan
Peer Reviewers Adeolu Oluremi; Tingbo Liang; Ramina Khoshaba Elia; Dheyaa Al-Sallami
  • Funder
  • This work was partially supported by Southern Technical University under scientific research awards
LATEST VERSION PUBLISHED 12 May 2026
https://doi.org/10.12688/f1000research.94159.2
Software Tool Article metrics
Revised
miND (miRNA NGS Discovery pipeline): a small RNA-seq analysis pipeline and report generator for microRNA biomarker discovery studies
[version 2; peer review: 3 approved]
Andreas Diendorfer, Kseniya Khamina, Marianne Pultar, Matthias Hackl
Peer Reviewers Kristian Almstrup, Nina Mørup and Ailsa Maria Main; Francisco J. Enguita, Nina Mørup and Ailsa Maria Main; Iddo Magen
  • Funder
  • Innovative Medicines Initiative 2
LATEST VERSION PUBLISHED 09 May 2026
https://doi.org/10.12688/f1000research.179155.1
Systematic Review metrics AWAITING PEER REVIEW
Diagnostic Performance of Micro-RNAs as Biomarkers for Endometrial Cancer: A Systematic Review and Meta-Analysis
[version 1; peer review: awaiting peer review]
Andi Darma Putra, Aldi Tamara Rahman, Lasmini Syariatin, Naufal Syafiq Darmawan, Kevin Nathaniel Cuandra, Muhammad Farid Hamka, Daivan Febri Juan Setiya, Aqilah Nurahmah Argani, Zaki Sidqi Aaliyya Aaliyya, Vina Sari Nugrahaning Widi, Siti Nurluthfia Rachmi, Phelia Klarissa Huang, Sheryl Pricilla Daniela Elizabeth Silalahi, Dhyani Paramita Wahyudi, Muhammd Fariz Firjatullah, Dhiya Ayuni Amri Amri, Ilhan Chandra Triasmaja, Christopher Daniel Tristan
Peer Reviewers Invited
PUBLISHED 16 Apr 2026
https://doi.org/10.12688/f1000research.175368.1
Opinion Article metrics
From Sponge to Scaffold: Re-centering lncRNAs in Epi- genetic Regulation
[version 1; peer review: 2 approved with reservations]
Anatoliy V Zubritskiy, Yulia A. Medvedeva
Peer Reviewers Luis A. Salazar; Mariela Montaño-Samaniego
  • Funder
  • Russian Science Foundation
PUBLISHED 27 Jan 2026
https://doi.org/10.12688/f1000research.164583.2
Software Tool Article metrics
Revised
Assembly and quantification of transcripts from noisy long reads with NIFFLR
[version 2; peer review: 1 approved with reservations, 2 not approved]
Alina Guo, Mihaela Pertea, Aleksey V Zimin
Peer Reviewers Colin Dewey; Fairlie Reese; Yuan Gao
  • Funders
  • Directorate for Biological Sciences
  • NIH
LATEST VERSION PUBLISHED 03 Dec 2025
https://doi.org/10.12688/f1000research.168556.1
Research Article metrics
Single-cell RNA sequencing of cerebrospinal fluid reveals the expansion of innate lymphoid cells with upregulated transposable elements in multiple sclerosis
[version 1; peer review: 2 not approved]
Pouria Mosaddeghi, Mitra Farahmandnejad, Mohammad M. Zarshenas
Peer Reviewers Raquel Garza; Patricia A. Thibault
  • Funder
  • Shiraz University of Medical Sciences
PUBLISHED 10 Oct 2025
https://doi.org/10.12688/f1000research.168181.1
Research Article metrics AWAITING PEER REVIEW
Variations in ADAR editing of nonsense-mediated decay targets in PD males and females
[version 1; peer review: awaiting peer review]
Heather Mercer, Aiswarya Mukundan Nair, Ayesha Tariq, Helen Piontkivska
Peer Reviewers Invited
  • Funders
  • The Brain Health Institute and the Healthy Communities Research Institute of Kent State University
  • The David J. Mlynar Fund for Research on Huntington's Disease
PUBLISHED 29 Sep 2025
https://doi.org/10.12688/f1000research.163843.1
Research Article metrics
Differences between human male and female neutrophils with respect to which RNAs are present in polysomes
[version 1; peer review: 1 not approved]
Darrell Pilling, Kristen M. Consalvo, Sara A. Kirolos, Richard H. Gomer
Peer Reviewers Sebastian Korste
  • Funder
  • National Institutes of Health
PUBLISHED 30 May 2025
https://doi.org/10.12688/f1000research.130430.3
Data Note metrics
Revised
Cigarette smoke alters circRNA expression in human T-cells
[version 3; peer review: 1 approved, 2 approved with reservations]
So Jin Hong, Zhaohao Liao, Kenneth W. Witwer, Ashley E. Russell
Peer Reviewers Thivanka Muthumalage; Zahraa Rahal; Meity Ardiana
  • Funder
  • National Institute on Drug Abuse
LATEST VERSION PUBLISHED 09 Apr 2025
https://doi.org/10.12688/f1000research.152034.2
Research Article metrics
Revised
RNA-sequencing Reveals Altered Gene Expression in the Ventromedial Hypothalamus Following Predator Odor Exposure
[version 2; peer review: 1 approved, 2 approved with reservations]
Ashely Shemery, Megan Gibson, Erin Gorrell, Diamond Daniel, Helen Piontkivska, Colleen M Novak
Peer Reviewers Yunhui Liu; Vito S Hernandez; Li Li and Yanan Wu
  • Funder
  • National Institute of Diabetes and Digestive and Kidney Diseases
LATEST VERSION PUBLISHED 05 Mar 2025
https://doi.org/10.12688/f1000research.151350.2
Systematic Review metrics
Revised
Diagnostic and Prognostic Values of miRNAs in High-Grade Gliomas: A Systematic Review
[version 2; peer review: 2 approved]
Renindra Ananda Aman, Mohammad Galih Pratama, Ricky Rusydi Satriawan, Irfani Ryan Ardiansyah, I Ketut Agus Suanjaya
Peer Reviewers Dessika Rahmawati; Abel Po-Hao Huang
LATEST VERSION PUBLISHED 15 Jan 2025
https://doi.org/10.12688/f1000research.74416.2
Software Tool Article metrics
Revised
BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data
[version 2; peer review: 1 approved, 2 approved with reservations]
Alan O'Callaghan, Nils Eling, John C. Marioni, Catalina A. Vallejos
Peer Reviewers Oliver M. Crook; Andrew McDavid; Michel S Naslavsky
  • Funders
  • Cancer Research UK
  • University of Edinburgh
  • European Molecular Biology Laboratory
LATEST VERSION PUBLISHED 07 May 2024
https://doi.org/10.12688/f1000research.125945.2
Review metrics
Revised
Pathomechanisms Of Non-Coding RNAs, Hub Genes, and Lifestyle Related To The Oxidative Stress In Type 2 Diabetes And Cardiac Complications.
[version 2; peer review: 1 approved, 1 not approved]
Fatemeh Hajibabaie, Faranak Aali, Navid Abedpoor
Peer Reviewers Gladys Ko; Yi Song
LATEST VERSION PUBLISHED 13 Sep 2023
https://doi.org/10.12688/f1000research.130316.1
Research Article metrics
Impact of estrogen and progesterone hormone receptors on the progression of interferon-γ sensitized breast cancer cells
[version 1; peer review: 1 approved, 1 approved with reservations, 1 not approved]
Israa Shihab, Amal Bouzid, Burcu Yener, Alaa Altaie, Poorna Manasa Bhamidimarri, Mouza Al Ameri, Riyad Bendardaf, Mawieh Hamad, Rifat Hamoudi
Peer Reviewers Aamir Ahmed; Wenbin Zhou; Claudia Lanari and Andrés Elia
  • Funders
  • Al-Jalila Foundation
  • ASPIRE Precision Medicine Research Institute Abu Dhabi
PUBLISHED 08 Sep 2023
https://doi.org/10.12688/f1000research.128320.3
Research Article metrics
Revised
Concatenated 16S rRNA sequence analysis improves bacterial taxonomy
[version 3; peer review: 2 approved]
Bobby Paul
Peer Reviewers Siddaramappa Shivakumara; Wellyzar Sjamsuridzal
  • Funder
  • Manipal Academy of Higher Education
LATEST VERSION PUBLISHED 01 Sep 2023
https://doi.org/10.12688/f1000research.125351.2
Research Article metrics
Revised
Circadian clock control of tRNA synthetases in Neurospora crassa
[version 2; peer review: 2 approved]
Kathrina D. Castillo, Emily D. Chapa, Teresa M. Lamb, Madhusree Gangopadhyay, Deborah Bell-Pedersen
Peer Reviewers Ruifeng Cao; Luis F. Larrondo
  • Funders
  • National Institute of General Medical Sciences
  • Arnold and Mabel Beckman Foundation
LATEST VERSION PUBLISHED 17 Aug 2023
https://doi.org/10.12688/f1000research.131861.2
Research Article metrics
Revised
Single-cell transcriptional uncertainty landscape of cell differentiation
[version 2; peer review: 2 approved]
Nan Papili Gao, Olivier Gandrillon, András Páldi, Ulysse Herbach, Rudiyanto Gunawan
Peer Reviewers Alessandro Giuliani; Geneviève Dupont
  • Funders
  • Swiss National Science Foundation
  • Agence Nationale de la Recherche
LATEST VERSION PUBLISHED 20 Jul 2023
https://doi.org/10.12688/f1000research.128716.2
Review metrics
Revised
Circadian clocks in health and disease: Dissecting the roles of the biological pacemaker in cancer
[version 2; peer review: 2 approved]
Bridget M. Fortin, Alisa L. Mahieu, Rachel C. Fellows, Nicholas R. Pannunzio, Selma Masri
Peer Reviewers Phillip Karpowicz; Kristin Eckel-Mahan
  • Funders
  • American Cancer Society
  • National Institutes of Health
  • Johnson and Johnson
  • V Foundation for Cancer Research
LATEST VERSION PUBLISHED 16 May 2023
https://doi.org/10.12688/f1000research.132670.1
Research Article metrics
Evaluation of serum complement C4 among COVID-19 patients in Khartoum state: a case control-based study
[version 1; peer review: 2 approved, 1 approved with reservations]
Mohammed Yahya, Yousif Ali Rahamtalla, Nasr Mohammed Nasr, Babbiker Mohammed Taher Gorish
Peer Reviewers Adnan Mezher Maysam; Marwa Hameed Alkhafaji; Andang Miatmoko
PUBLISHED 21 Apr 2023
https://doi.org/10.12688/f1000research.125579.1
Research Article metrics
Cell-type classification of cancer single-cell RNA-seq data using the Subsemble ensemble-based machine learning classifier
[version 1; peer review: 3 approved with reservations]
David Chen, Parisa Shooshtari
Peer Reviewers Saskia Freytag; Yue Cao; Zhixiang Ren
  • Funders
  • Children's Health Research Institute
  • Ontario Institute for Cancer Research
  • Natural Sciences and Engineering Research Council of Canada
  • NSERC Undergraduate Student Research Award
PUBLISHED 14 Apr 2023
1-20 of 41 ARTICLES
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