Bioinformatics

Bioinformatics

ISCB

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21-40 of 51 ARTICLES
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https://doi.org/10.12688/f1000research.16415.1
Method Article metrics
Large-scale protein function prediction using heterogeneous ensembles
[version 1; peer review: 2 approved]
Linhua Wang, Jeffrey Law, Shiv D. Kale, T. M. Murali, Gaurav Pandey
Peer Reviewers Guoxian Yu; Predrag Radivojac
  • Funders
  • International Business Machines Corporation
  • Intelligence Advanced Research Projects Activity
  • National Institutes of Health
PUBLISHED 28 Sep 2018
https://doi.org/10.12688/f1000research.14242.1
Editorial metrics NOT PEER REVIEWED
Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago
[version 1; peer review: not peer reviewed]
Lonnie Welch, Bruno Gaeta, Diane E. Kovats, Milana Frenkel Morgenstern
  • Funder
  • None
PUBLISHED 19 Mar 2018
https://doi.org/10.12688/f1000research.13705.1
Opinion Article metrics
Matchmaking in Bioinformatics
[version 1; peer review: 2 approved]
Ewy Mathé, Ben Busby, Helen Piontkivska, Team of Developers
Peer Reviewers Robert M. Blumenthal; Guenter Tusch
  • Funder
  • National Institutes of Health
PUBLISHED 09 Feb 2018
https://doi.org/10.12688/f1000research.13463.1
Editorial metrics NOT PEER REVIEWED
Highlights of the second ISCB Student Council Symposium in Africa, 2017
[version 1; peer review: not peer reviewed]
Candice N. Rafael, Efejiro Ashano, Yumna Moosa, Sayane Shome, Dan DeBlasio
  • Funders
  • Gordon and Betty Moore Foundation
  • International Society for Computational Biology
  • National Institutes of Health
  • National Science Foundation
PUBLISHED 28 Dec 2017
https://doi.org/10.12688/f1000research.11352.2
Research Article metrics
Revised
New chimeric RNAs in acute myeloid leukemia
[version 2; peer review: 2 approved]
Florence Rufflé, Jerome Audoux, Anthony Boureux, Sacha Beaumeunier, Jean-Baptiste Gaillard, Elias Bou Samra, Andre Megarbane, Bruno Cassinat, Christine Chomienne, Ronnie Alves, Sebastien Riquier, Nicolas Gilbert, Jean-Marc Lemaitre, Delphine Bacq-Daian, Anne Laure Bougé, Nicolas Philippe, Therese Commes
Peer Reviewers Hui Li; Charles Gawad
  • Funders
  • Agence Nationale de la Recherche
  • Fondation pour la Recherche Médicale
  • Ligue Nationale Contre le Cancer
  • Le Cancéropôle Grand Sud-Ouest (GSO)
LATEST VERSION PUBLISHED 19 Dec 2017
https://doi.org/10.12688/f1000research.12321.1
Editorial metrics NOT PEER REVIEWED
Second ISCB Latin American Student Council Symposium (LA-SCS) 2016
[version 1; peer review: not peer reviewed]
Alexander Miguel Monzon, Marcia A. Hasenahuer, Estefanía Mancini, Nilson Coimbra, Fiorella Cravero, Javier Cáceres-Molina, César A. Ramírez-Sarmiento, Nicolas Palopoli, Pieter Meysman, R. Gonzalo Parra
  • Funders
  • European Molecular Biology Organization
  • uBiome
  • Universidad Nacional de San Martin
  • Consejo Nacional de Investigaciones Científicas y Técnicas
  • Asociación Argentina de Bioinformática y Biología Computacional
PUBLISHED 16 Aug 2017
https://doi.org/10.12688/f1000research.11588.1
Editorial metrics NOT PEER REVIEWED
2017 ISCB Accomplishment by a Senior Scientist Award: Pavel Pevzner
[version 1; peer review: not peer reviewed]
Christiana N. Fogg, Diane E. Kovats, Bonnie Berger
PUBLISHED 26 Jun 2017
https://doi.org/10.12688/f1000research.11587.1
Editorial metrics NOT PEER REVIEWED
2017 Outstanding Contributions to ISCB Award: Fran Lewitter
[version 1; peer review: not peer reviewed]
Christiana N. Fogg, Diane E. Kovats, Bonnie Berger
PUBLISHED 26 Jun 2017
https://doi.org/10.12688/f1000research.11586.1
Editorial metrics NOT PEER REVIEWED
2017 ISCB Overton Prize: Christoph Bock
[version 1; peer review: not peer reviewed]
Christiana N. Fogg, Diane E. Kovats, Bonnie Berger
PUBLISHED 26 Jun 2017
https://doi.org/10.12688/f1000research.11585.1
Editorial metrics NOT PEER REVIEWED
2017 ISCB Innovator Award: Aviv Regev
[version 1; peer review: not peer reviewed]
Christiana N. Fogg, Diane E. Kovats, Bonnie Berger
PUBLISHED 26 Jun 2017
https://doi.org/10.12688/f1000research.10529.2
Research Article metrics
Revised
Systematic assessment of multi-gene predictors of pan-cancer cell line sensitivity to drugs exploiting gene expression data
[version 2; peer review: 2 approved]
Linh Nguyen, Cuong C Dang, Pedro J. Ballester
Peer Reviewers Marc Poirot; Ronnie Alves
  • Funders
  • Vietnam National International Development
  • A*MIDEX
LATEST VERSION PUBLISHED 14 Mar 2017
https://doi.org/10.12688/f1000research.10114.3
Research Note metrics
Revised
Optimal threshold estimation for binary classifiers using game theory
[version 3; peer review: 3 approved]
Ignacio Enrique Sanchez
Peer Reviewers Pieter Meysman; Luis Diambra; Marcel Brun and Arjen ten Have
LATEST VERSION PUBLISHED 08 Feb 2017
https://doi.org/10.12688/f1000research.10420.1
Editorial metrics NOT PEER REVIEWED
ISCB-Student Council Narratives: Strategical development of the ISCB-Regional Student Groups in 2016
[version 1; peer review: not peer reviewed]
Sayane Shome, Pieter Meysman, R. Gonzalo Parra, Alexander Miguel Monzon, Nicolas Palopoli, Benjamen White, Farzana Rahman, Mehedi Hassan, Zeynep Özkeserli, Efejiro Ashano, V. Keith Hughitt, Muhammad Uzair Khan, Denis J. Murphy
  • Funder
  • International Society for Computational Biology
PUBLISHED 20 Dec 2016
https://doi.org/10.12688/f1000research.10389.1
Editorial metrics NOT PEER REVIEWED
Highlights from the ISCB Student Council Symposia in 2016
[version 1; peer review: not peer reviewed]
Bart Cuypers, Annika Jacobsen, Ben Siranosian, Kevin Schwahn, Ashley Mae Conard, Nanne Aben, Mehedi Hassan, Nazeefa Fatima, Susanne M.A. Hermans, Melissa Woghiren, Pieter Meysman, Farzana Rahman, Anupama Jigisha
  • Funder
  • International Society for Computational Biology
PUBLISHED 15 Dec 2016
https://doi.org/10.12688/f1000research.10103.1
Method Article metrics
A data-driven approach to estimating the number of clusters in hierarchical clustering
[version 1; peer review: 2 approved, 1 approved with reservations]
Antoine E. Zambelli
Peer Reviewers Xin Zou; Alok Sharma; Dylan M. Owen
PUBLISHED 01 Dec 2016
https://doi.org/10.12688/f1000research.10116.1
Research Article metrics
Dynamics of tRNA fragments and their targets in aging mammalian brain
[version 1; peer review: 2 approved]
Spyros Karaiskos, Andrey Grigoriev
Peer Reviewers Tatiana V. Tatarinova; Laura Kamenetzky and Natalia Macchiaroli
PUBLISHED 24 Nov 2016
https://doi.org/10.12688/f1000research.9663.1
Editorial metrics NOT PEER REVIEWED
The 2016 Bioinformatics Open Source Conference (BOSC)
[version 1; peer review: not peer reviewed]
Nomi L. Harris, Peter J.A. Cock, Brad Chapman, Christopher J. Fields, Karsten Hokamp, Hilmar Lapp, Monica Muñoz-Torres, Heather Wiencko
PUBLISHED 06 Oct 2016
https://doi.org/10.12688/f1000research.9093.1
Research Article metrics
Cluster analysis of Plasmodium RNA-seq time-course data identifies stage-specific co-regulated biological processes and regulatory elements
[version 1; peer review: 1 approved, 2 approved with reservations]
Efejiro Ashano, Itunuoluwa Isewon, Jelili Oyelade, Ezekiel Adebiyi
Peer Reviewers Manuel Corpas; Hilary Ann Coller; Thomas D. Otto and Gavin Rutledge
PUBLISHED 08 Aug 2016
https://doi.org/10.12688/f1000research.9109.1
Research Note metrics
The frequency distribution of vitamin D Receptor fok I gene polymorphism among Ugandan pulmonary TB patients
[version 1; peer review: 1 approved, 2 approved with reservations]
Ester L. Acen, William Worodria, Peter Mulamba, Andrew Kambugu, Joseph Erume
Peer Reviewers Simon H. Martin; Lori B. Chibnik; Range Nyagosya
PUBLISHED 29 Jul 2016
https://doi.org/10.12688/f1000research.9158.1
Editorial metrics NOT PEER REVIEWED
2016 ISCB Overton Prize awarded to Debora Marks
[version 1; peer review: not peer reviewed]
Christiana N. Fogg, Diane E. Kovats
PUBLISHED 05 Jul 2016
21-40 of 51 ARTICLES
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Gateway Areas
  • Methods and Tools
    The Methods and Tools Gateway Area will allow researchers to publish outputs concerning both the application and research into the use of various computational methods to analyse quantities of biological data for a range of different results, including predictions and discoveries. Read more keyboard_arrow_right
  • Genetics and Genomics
    The Genetics & Genomics Gateway Area will enable researchers to publish content related to the analysis, storage and accessibility of DNA, RNA and protein sequences. This analysis can be conducted in a variety of ways, including comparison of sequences and relationships, identification of functions, and recognition of patterns across the samples. Read more keyboard_arrow_right
  • Transcriptomics
    By curating all outputs related to the analysis of the RNA transcripts produced by a genotype, the Transcriptomics Gateway Area will allow readers to easily access content pertinent to this research. Read more keyboard_arrow_right
  • Proteomics
    The Proteomics Gateway Area has been established to allow authors to access and publish research content related to the large-scale study of entire sets of proteins as proteomes. Read more keyboard_arrow_right
  • Metagenomics
    This Gateway Area will allow members of the bioinformatics community to collate all research related to the collection of genomes from an environmental sample. Read more keyboard_arrow_right
  • Metabolomics
    The Metabolomics Gateway Area provides a location for all research related to the large-scale study of metabolites within cells and organisms, particularly with an emphasis on the chemical processes involving these molecules. Read more keyboard_arrow_right
  • Phylogenetics
    The Phylogenetics Gateway Area will present researchers with the opportunity to locate outputs related to the evolutionary relationship between species, genes or organisms, among other entities. Read more keyboard_arrow_right
  • Systems Biology
    The Systems Biology Gateway Area acts as a hub for the bioinformatics community to publish their outputs which has been produced using expansive data and computational and mathematical methodology and analysis to develop a holistic approach towards biological mechanisms. We encourage submitters to publish a plethora of content related to both technological advances in the field, and how these developments impact the wider bioinformatics community. Read more keyboard_arrow_right
  • Structural Bioinformatics
    This Gateway Area provides researchers with the opportunity to collate all relevant content related to the analysis and modelling of molecules to determine their role and function within a cell. Read more keyboard_arrow_right
  • Pathway Analysis
    The Pathway Analysis Gateway Area allows for researchers to locate and publish curated content related to this topic, in the use of tools to identify relationships using high-throughput datasets. Read more keyboard_arrow_right
  • ISCB
    The ISCB Gateway Area reflects the support of the ISCB for the Bioinformatics Gateway and will provide a venue for publication for all content presented at ISCB-related events, including the ISMB & ECCB annual conference, Student Council events, and COSIs, with publishable outputs ranging from slides, documents and posters to research requiring expert peer-review. Read more keyboard_arrow_right
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