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https://doi.org/10.12688/f1000research.16415.1
Method Article metrics
Large-scale protein function prediction using heterogeneous ensembles
[version 1; peer review: 2 approved]
Linhua Wang, Jeffrey Law, Shiv D. Kale, T. M. Murali, Gaurav Pandey
Peer Reviewers Guoxian Yu; Predrag Radivojac
  • Funders
  • International Business Machines Corporation
  • Intelligence Advanced Research Projects Activity
  • National Institutes of Health
PUBLISHED 28 Sep 2018
https://doi.org/10.12688/f1000research.14148.2
Software Tool Article metrics
Revised
segment_liftover : a Python tool to convert segments between genome assemblies
[version 2; peer review: 2 approved]
Bo Gao, Qingyao Huang, Michael Baudis
Peer Reviewers Oscar Krijgsman; Ryan K. Dale
  • Funders
  • China Scholarship Council
  • Universität Zürich
LATEST VERSION PUBLISHED 08 Jun 2018
https://doi.org/10.12688/f1000research.13930.1
Software Tool Article metrics
Seqfam: A python package for analysis of Next Generation Sequencing DNA data in families
[version 1; peer review: 1 approved with reservations, 1 not approved]
Matthew Frampton, Elena R. Schiff, Nikolas Pontikos, Anthony W. Segal, Adam P. Levine
Peer Reviewers Brent S. Pedersen; Alexandre Bureau and Ingo Ruczinski
  • Funder
  • Charles Wolfson Charitable Trust
PUBLISHED 06 Mar 2018
https://doi.org/10.12688/f1000research.11022.3
Software Tool Article metrics
Revised
Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality
[version 3; peer review: 2 approved]
Scott Gigante
Peer Reviewers Matthew Loose; David A. Eccles
  • Funder
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 28 Sep 2017
https://doi.org/10.12688/f1000research.10082.2
Software Tool Article metrics
Revised
Disambiguate: An open-source application for disambiguating two species in next generation sequencing data from grafted samples
[version 2; peer review: 3 approved]
Miika J. Ahdesmäki, Simon R. Gray, Justin H. Johnson, Zhongwu Lai
Peer Reviewers Daniel Nicorici; Matthew D. Eldridge; Gavin R. Oliver and Asha A. Nair
LATEST VERSION PUBLISHED 24 Jan 2017
https://doi.org/10.12688/f1000research.8251.2
Software Tool Article metrics
Revised
pyGeno: A Python package for precision medicine and proteogenomics
[version 2; peer review: 1 approved, 2 approved with reservations]
Tariq Daouda, Claude Perreault, Sébastien Lemieux
Peer Reviewers Lynn Fink; Hilary Ann Coller; Christian Cole
LATEST VERSION PUBLISHED 10 May 2016
https://doi.org/10.12688/f1000research.7118.2
Software Tool Article metrics
Revised
DREAMTools: a Python package for scoring collaborative challenges
[version 2; peer review: 1 approved, 2 approved with reservations]
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Alberto de la Fuente, Mehmet Gönen, Steven M. Hill, Bruce Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
Peer Reviewers Konrad Hinsen; Rafael Najmanovich; Nicola J. Mulder
LATEST VERSION PUBLISHED 08 Apr 2016
41-47 of 47 ARTICLES
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