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https://doi.org/10.12688/f1000research.17456.1
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pdb-tools: a swiss army knife for molecular structures
[version 1; peer review: 2 approved]
João P. G. L. M. Rodrigues, João M.C. Teixeira, Mikaël Trellet, Alexandre M. J. J. Bonvin
Peer Reviewers Bruno L. Victor; Peter W. Rose
  • Funders
  • Niels-Stensen Fellowship
  • Horizon 2020
PUBLISHED 20 Dec 2018
https://doi.org/10.12688/f1000research.16451.1
Review metrics
Oscillations and Spike Entrainment
[version 1; peer review: 2 approved]
Charles J. Wilson, Matthew H. Higgs, DeNard V. Simmons, Juan C. Morales
Peer Reviewers Judith R. Walters; Andreas Draguhn
  • Funder
  • National Institute of Neurological Disorders and Stroke
PUBLISHED 20 Dec 2018
https://doi.org/10.12688/f1000research.16405.2
Research Article metrics
Revised
Mean deviation based identification of activated voxels from time-series fMRI data of schizophrenia patients
[version 2; peer review: 2 approved]
Indranath Chatterjee
Peer Reviewers Sahil Bajaj; Sagarika Bhattacharjee
LATEST VERSION PUBLISHED 20 Dec 2018
https://doi.org/10.12688/f1000research.16659.2
Method Article metrics
Revised
Embryonic zebrafish xenograft assay of human cancer metastasis
[version 2; peer review: 2 approved]
David Hill, Lanpeng Chen, Ewe Snaar-Jagalska, Bill Chaudhry
Peer Reviewers Adam Hurlstone; Yi Feng
  • Funders
  • National Centre for the Replacement Refinement and Reduction of Animals in Research
  • KWF Kankerbestrijding
LATEST VERSION PUBLISHED 20 Dec 2018
https://doi.org/10.12688/f1000research.16927.2
Research Article metrics
Revised
Do age and mating status affect olfactory response of the parasitoid, Microplitis croceipes (Hymenoptera: Braconidae) to host-related plant odors?
[version 2; peer review: 2 approved]
Matthew Burrows, Tolulope Morawo, Henry Fadamiro
Peer Reviewers Lukasz Stelinski; Andrea Clavijo McCormick
  • Funder
  • Alabama Agricultural Experiment Station
LATEST VERSION PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.15809.2
Research Article metrics
Revised
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data
[version 2; peer review: 3 approved]
Saskia Freytag, Luyi Tian, Ingrid Lönnstedt, Milica Ng, Melanie Bahlo
Peer Reviewers Joshua W. K. Ho; Shila Ghazanfar; Stephanie C Hicks
  • Funder
  • National Health and Medical Research Council
LATEST VERSION PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.15659.1
Review metrics
Recent advances in understanding Propionibacterium acnes (Cutibacterium acnes) in acne
[version 1; peer review: 2 approved]
Eftychia Platsidaki, Clio Dessinioti
Peer Reviewers Christine Roques; Andrew McDowell
PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.16468.1
Review metrics
What’s new in dry eye disease diagnosis? Current advances and challenges
[version 1; peer review: 3 approved]
Shruti Aggarwal, Anat Galor
Peer Reviewers Peter R Keller; Kazuo Tsubota; Ali Reza Djalilian
PUBLISHED 19 Dec 2018
https://doi.org/10.12688/f1000research.16969.1
Case Report metrics
Case Report: Synchronous adenoid cystic variant of basal cell carcinoma in the right lumbar region: case report of an incidental finding in a patient with breast carcinoma
[version 1; peer review: 2 not approved]
Sucheta Gandhe, Rahul Patil, Rajnish Nagarkar
Peer Reviewers Semir Vranic; Mariam Totonchy
PUBLISHED 18 Dec 2018
https://doi.org/10.12688/f1000research.17199.1
Research Article metrics
Intra-canal medication containing silver nanoparticle versus calcium hydroxide in reducing postoperative pain: A randomized clinical trial
[version 1; peer review: 1 approved, 1 approved with reservations]
Fatma El Zahraa El Abbasy, Salsabyl Ibrahim, Olfat Shaker, Geraldine Ahmed
Peer Reviewers Reham Hassan; Mothanna K. Al Rahabi
PUBLISHED 18 Dec 2018
https://doi.org/10.12688/f1000research.15480.1
Review metrics
Updates in Urologic Robot Assisted Surgery
[version 1; peer review: 2 approved]
Anojan Navaratnam, Haidar Abdul-Muhsin, Mitchell Humphreys
Peer Reviewers David Lee and Mohammed Shahait; Scott Leslie and Danielle van Diepen
  • Funder
  • Australasian Urologic Fund
PUBLISHED 18 Dec 2018
https://doi.org/10.12688/f1000research.15447.2
Research Article metrics
Revised
Nucleocytoplasmic distribution of S6K1 depends on the density and motility of MCF-7 cells in vitro
[version 2; peer review: 2 approved]
Viktoriia Kosach, Kateryna Shkarina, Anastasiia Kravchenko, Yuliia Tereshchenko, Evelina Kovalchuk, Larysa Skoroda, Mykhailo Krotevych, Antonina Khoruzhenko
Peer Reviewers Olivier E. Pardo; Yegor Vassetzky and Svetlana Dokudovskaya
  • Funder
  • National Academy of Sciences of Ukraine
LATEST VERSION PUBLISHED 17 Dec 2018
https://doi.org/10.12688/f1000research.16203.1
Review metrics
Beyond transcription factors: roles of mRNA decay in regulating gene expression in plants
[version 1; peer review: 3 approved]
Leslie E Sieburth, Jessica N Vincent
Peer Reviewers Brian D. Gregory; Daniel Silhavy; Dominique Gagliardi
  • Funder
  • National Science Foundation
PUBLISHED 17 Dec 2018
https://doi.org/10.12688/f1000research.14222.2
Opinion Article metrics
Revised
A Key Role for the Genetic Counsellor in the Genomics Era
[version 2; peer review: 2 approved, 1 approved with reservations]
Flora M. Joseph
Peer Reviewers Maria Soller and Charlotta Ingvoldstad Malmgren; Vicki Wiles and Sue Kenwrick;  Andrew Cuthbert
LATEST VERSION PUBLISHED 17 Dec 2018
https://doi.org/10.12688/f1000research.17029.1
Research Article metrics
Cortical auditory evoked potentials and hemispheric specialization of speech in individuals with learning disability and healthy controls: A preliminary study
[version 1; peer review: 1 approved, 2 approved with reservations]
Mayur Bhat, Hari Prakash Palaniswamy, Arivudai Nambi Pichaimuthu, Nitha Thomas
Peer Reviewers Sandeep Maruthy; Hemanth Narayan Shetty; Lauren Petley and David Moore
PUBLISHED 17 Dec 2018
https://doi.org/10.12688/f1000research.16551.1
Review metrics
Anergy into T regulatory cells: an integration of metabolic cues and epigenetic changes at the Foxp3 conserved non-coding sequence 2
[version 1; peer review: 2 approved]
Milagros Silva Morales, Daniel Mueller
Peer Reviewers Jeffrey Rathmell; Fernando Macian
  • Funders
  • NCI
  • NIH/NIAID
PUBLISHED 17 Dec 2018
https://doi.org/10.12688/f1000research.13849.2
Software Tool Article metrics
Revised
Breathe Easy EDA: A MATLAB toolbox for psychophysiology data management, cleaning, and analysis
[version 2; peer review: 2 approved]
John C. Ksander, Sarah M. Kark, Christopher R. Madan
Peer Reviewers Edwin S.  Dalmaijer; Jens Foell
  • Funders
  • Searle scholars grant
  • National Institute of Mental Health
  • National Institutes of Health
  • National Institute of General Medical Sciences
  • Canadian Institutes of Health Research
  • National Science Foundation
LATEST VERSION PUBLISHED 14 Dec 2018
https://doi.org/10.12688/f1000research.16190.1
Review metrics
Positive and negative regulation of Shh signalling in vertebrate retinal development
[version 1; peer review: 3 approved]
Viviana E Gallardo, Paola Bovolenta
Peer Reviewers Valerie A Wallace; Michel Cayouette; Andrew J. Waskiewicz
  • Funders
  • ERA-Net Neuron
  • Fundación Ramón Areces
  • H2020-MSCA-IF-2016
  • Ministerio de Economía y Competitividad
PUBLISHED 14 Dec 2018
https://doi.org/10.12688/f1000research.14770.3
Method Article metrics
Revised
Estimating the contribution of studies in network meta-analysis: paths, flows and streams
[version 3; peer review: 2 approved, 1 approved with reservations]
Theodoros Papakonstantinou, Adriani Nikolakopoulou, Gerta Rücker, Anna Chaimani, Guido Schwarzer, Matthias Egger, Georgia Salanti
Peer Reviewers Jochem König; Annette M. O'Connor; John R. Thompson
  • Funder
  • Campbell Collaboration Method
LATEST VERSION PUBLISHED 13 Dec 2018
https://doi.org/10.12688/f1000research.14227.2
Opinion Article metrics
Revised
Factors targeting MED12 to drive tumorigenesis?
[version 2; peer review: 2 approved, 1 approved with reservations]
Jörn Bullerdiek, Birgit Rommel
Peer Reviewers Takeshi Kurita; Eric Glasgow; Jose M. Teixeira
LATEST VERSION PUBLISHED 13 Dec 2018
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