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https://doi.org/10.12688/f1000research.148093.1
Research Article metrics
Increased biofilm staining after deletion of sepA in enteroaggregative E. coli strains is not due to the lack of SepA
[version 1; peer review: 1 approved with reservations, 1 not approved]
Viktoria A Van Nederveen, Yuliya Seldina Johnson, Anthony Soc, Angela R Melton-Celsa
Peer Reviewers Ikechukwu Moses; Jean-Philippe Côté
  • Funder
  • Uniformed Services University
PUBLISHED 03 Jun 2024
https://doi.org/10.12688/f1000research.126734.2
Opinion Article metrics
Revised
Systems Biology in ELIXIR: modelling in the spotlight
[version 2; peer review: 2 approved, 1 approved with reservations]
Vitor Martins dos Santos, Mihail Anton, Barbara Szomolay, Marek Ostaszewski, Ilja Arts, Rui Benfeitas, Victoria Dominguez Del Angel, Elena Domínguez-Romero, Polonca Ferk, Dirk Fey, Carole Goble, Martin Golebiewski, Kristina Gruden, Katharina F. Heil, Henning Hermjakob, Pascal Kahlem, Maria I. Klapa, Jasper Koehorst, Alexey Kolodkin, Martina Kutmon, Brane Leskošek, Sébastien Moretti, Wolfgang Müller, Marco Pagni, Tadeja Rezen, Miguel Rocha, Damjana Rozman, David Šafránek, William T. Scott, Rahuman S. Malik Sheriff, Maria Suarez Diez, Kristel Van Steen, Hans V Westerhoff, Ulrike Wittig, Katherine Wolstencroft, Anze Zupanic, Chris T. Evelo, John M. Hancock
Peer Reviewers Yoram Vodovotz; Herbert Sauro; Ioannis Androulakis
  • Funder
  • EPAnEk-NSRF
LATEST VERSION PUBLISHED 31 May 2024
https://doi.org/10.12688/f1000research.149577.1
Research Article metrics
Easing genomic surveillance: A comprehensive performance evaluation of long-read assemblers across multi-strain mixture data of HIV-1 and Other pathogenic viruses for constructing a user-friendly bioinformatic pipeline
[version 1; peer review: 2 approved, 1 approved with reservations]
Sara Wattanasombat, Siripong Tongjai
Peer Reviewers Udom Sae-Ueng; Rujira Chaysiri; Sira Sriswasdi
  • Funders
  • The Health Systems Research Institute, Thailand
  • The Faculty of Medicine Research Fund, Chiang Mai University,
PUBLISHED 31 May 2024
https://doi.org/10.12688/f1000research.110775.2
Research Article metrics
Revised
Indoor air quality at the Arab governmental girls’ schools
[version 2; peer review: 2 approved, 1 approved with reservations]
Mahmoud Fathy Elsharkawy, Mohammed Tawfiq Aljassim, Abdulmalik Salman Alsaif, Sana Abdullah Alsulaiman
Peer Reviewers Eltigani Omer; Adel Zakaria; Katarzyna Gładyszewska-Fiedoruk
LATEST VERSION PUBLISHED 30 May 2024
https://doi.org/10.12688/f1000research.148473.1
Genome Note metrics
The first complete mitochondrional genome of Anopheles gibbinsi using a skimming sequencing approach.
[version 1; peer review: 3 approved]
Renee Ali, Mary E. Gebhardt, James Sichivula Lupiya, Mbanga Muleba, Douglas E. Norris
Peer Reviewers Nicola Zadra; Luke Ambrose; Alexey Makunin
  • Funders
  • Johns Hopkins Malaria Research Institute
  • NIH T32 Training Grant
  • NSF-Accelerator Project D-688: Computing the Biome
  • NIH Southern and Central Africa International Centers of Excellence for Malaria Research
PUBLISHED 30 May 2024
https://doi.org/10.12688/f1000research.135164.2
Method Article metrics
Revised
On the limits of inferring biophysical parameters of RBP-RNA interactions from in vitro RNA Bind’n Seq data
[version 2; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Niels Schlusser, Mihaela Zavolan
Peer Reviewers Johannes Söding; Jun Zhang; Junbai Wang; Andreas Schlundt
  • Funder
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 29 May 2024
https://doi.org/10.12688/f1000research.130043.3
Research Article metrics
Revised
The identification of retro-DNAs in primate genomes as DNA transposons mobilizing via retrotransposition
[version 3; peer review: 2 approved]
Wangxiangfu Tang, Ping Liang
Peer Reviewers Rene Massimiliano Marsano; Shengjun Tan
  • Funders
  • Natural Sciences and Engineering Research Council of Canada
  • Ontario Research Foundation
  • Canada Foundation for Innovation
  • Canada Research Chairs
LATEST VERSION PUBLISHED 29 May 2024
https://doi.org/10.12688/f1000research.148102.1
Research Article metrics
Effectiveness of Mannitol Use on Clinical Outcomes of Severe Traumatic Brain Injury Patients
[version 1; peer review: 1 approved, 2 approved with reservations]
Syahrul Syahrul, Nasrul Musadir, Hidayaturrahmi Hidayaturrahmi, Taufik Suryadi, Aqil Naufal Syahrul
Peer Reviewers Brandon Lucke-Wold; Farhad Bal’afif; Muhammad Ashir Shafique
  • Funder
  • Syiah Kuala University Research Institute
PUBLISHED 28 May 2024
https://doi.org/10.12688/f1000research.127691.2
Research Article metrics
Revised
Breast cancer related physical, psychological, social and spiritual domains of quality of life among women in Bahrain
[version 2; peer review: 1 approved, 2 not approved]
Gayathripriya Narayanan, Muyssar Sabri Awadallah, Rajeswari Krishnasamy
Peer Reviewers Salwa Hagag Abdelaziz; Chung-Ying Lin; Tharin Phenwan
LATEST VERSION PUBLISHED 28 May 2024
https://doi.org/10.12688/f1000research.134798.2
Software Tool Article metrics
Revised
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
[version 2; peer review: 1 approved, 3 approved with reservations]
Maxime Borry, Adrian Forsythe, Aida Andrades Valtueña, Alexander Hübner, Anan Ibrahim, Andrea Quagliariello, Anna E. White, Arthur Kocher, Åshild J. Vågene‬, Bjørn Peare Bartholdy, Diāna Spurīte, Gabriel Yaxal Ponce-Soto, Gunnar Neumann, I-Ting Huang, Ian Light, Irina M. Velsko, Iseult Jackson, Jasmin Frangenberg, Javier G. Serrano, Julien Fumey, Kadir T. Özdoğan, Kelly E. Blevins, Kevin G. Daly, Maria Lopopolo, Markella Moraitou, Megan Michel, Meriam van Os, Miriam J. Bravo-Lopez, Mohamed S. Sarhan, Nihan D. Dagtas, Nikolay Oskolkov, Olivia S. Smith, Ophélie Lebrasseur, Piotr Rozwalak, Raphael Eisenhofer, Sally Wasef, Shreya L. Ramachandran, Valentina Vanghi, Christina Warinner, James A. Fellows Yates
Peer Reviewers Timothy Read and Robert Petit III; Jonas Coelho Kasmanas; Intikhab Alam; Emma Griffiths
  • Funders
  • Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean
  • Carlsbergfondet
  • H2020 European Research Council
  • Nederlandse Organisatie voor Wetenschappelijk Onderzoek
  • Knut och Alice Wallenbergs Stiftelse
  • National Institutes of Health
  • Carl Tryggers Stiftelse för Vetenskaplig Forskning
  • Deutsche Forschungsgemeinschaft
  • Friedrich-Schiller-Universität Jena
  • Science for Life Laboratory National Sequencing Projects
  • Werner Siemens-Stiftung
  • Max-Planck-Gesellschaft
  • National Science Foundation
  • Leverhulme Trust
  • Svenska Forskningsrådet Formas
  • Science Foundation Ireland-Irish Research Council
  • Science Foundation Ireland Centre for Research Training in Genomics Data Science
  • Università degli Studi di Padova
  • Institut Pasteur
  • H2020 Marie Skłodowska-Curie Actions
LATEST VERSION PUBLISHED 28 May 2024
https://doi.org/10.12688/f1000research.145892.1
Study Protocol metrics
Analytical observational study of salmonella PCR and its comparison with routine laboratory parameters in cases of enteric fever in tertiary care hospital in central India
[version 1; peer review: 2 not approved]
Dr.Khadija Hamdulay, Rajendra Ravekar, Ashwini Tayade
Peer Reviewers Swathi Krishna Njarekkattuvalappil; Dilip Abraham
PUBLISHED 28 May 2024
https://doi.org/10.12688/f1000research.149237.1
Software Tool Article metrics
ZARP: A user-friendly and versatile RNA-seq analysis workflow
[version 1; peer review: 2 approved with reservations]
Maria Katsantoni, Foivos Gypas, Christina J Herrmann, Dominik Burri, Maciej Bąk, Paula Iborra, Krish Agarwal, Meriç Ataman, Máté Balajti, Noè Pozzan, Niels Schlusser, Youngbin Moon, Aleksei Mironov, Anastasiya Börsch, Mihaela Zavolan, Alexander Kanitz
Peer Reviewers Silvia Liu; Bo Li
  • Funders
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • National Center of Competence in Research RNA & Disease
PUBLISHED 24 May 2024
https://doi.org/10.12688/f1000research.144624.2
Method Article metrics
Revised
Exploring and analyzing the role of hybrid spectrum sensing methods in 6G-based smart health care applications
[version 2; peer review: 2 approved]
Arun Kumar, Raminder Kaur, Nishant Gaur, Aziz Nanthaamornphong
Peer Reviewers Fahad Ahmad; H. ALSHARIF
LATEST VERSION PUBLISHED 23 May 2024
https://doi.org/10.12688/f1000research.108884.3
Research Article metrics
Revised
An investigation of syrinx morphometry and sound frequency association in lovebirds (Agapornis fischeri) chirps
[version 3; peer review: 2 approved]
Cytra Meyliana Surya Dewi, Yeni Dhamayanti, Faisal Fikri, Agus Purnomo, Shafia Khairani, Shekhar Chhetri, Muhammad Thohawi Elziyad Purnama
Peer Reviewers Abdulmojeed Yakubu; Abdul Razak Alimon
  • Funder
  • Faculty of Veterinary Medicine, Universitas Airlangga
LATEST VERSION PUBLISHED 22 May 2024
https://doi.org/10.12688/f1000research.133724.2
Opinion Article metrics
Revised
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity
[version 2; peer review: 3 approved]
Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Bachir Balech, Endre Barta, Physilia Ying Shi Chua, Valeria Di Cola, Katharina F. Heil, Graham M. Hughes, Lars S. Jermiin, Matúš Kalaš, Jerry Lanfear, Evangelos Pafilis, Patricia M. Palagi, Aristotelis C. Papageorgiou, Joana Paupério, Fotis Psomopoulos, Niels Raes, Josephine Burgin, Toni Gabaldón
Peer Reviewers Patrick Comer; Abigail Benson and Stephen Formel; Cher FY Chow
  • Funders
  • Swiss State Secretariat for Education, Research and Innovation (SERI)
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
LATEST VERSION PUBLISHED 22 May 2024
https://doi.org/10.12688/f1000research.144671.2
Research Article metrics
Revised
Artificial Intelligence Model Chatgpt-4: Entrepreneur Candidate and Entrepreneurship Example
[version 2; peer review: 2 approved, 1 approved with reservations]
Muhammet SAYGIN, Mustafa BEKMEZCİ, Evren DİNÇER
Peer Reviewers Ivan Diryana Sudirman; Muhammad Nadeem; Tahseen Anwer Arshi and Prof. Venkoba Rao
LATEST VERSION PUBLISHED 22 May 2024
https://doi.org/10.12688/f1000research.144853.2
Brief Report metrics
Revised
Pyuria in hospitalized general medical patients without urinary tract infection
[version 2; peer review: 2 approved, 1 approved with reservations, 1 not approved]
Praveenkumar Thyagaraju, Jharna Mandal, Hariswar Pari Thenmozhi, Surendran Deepanjali
Peer Reviewers Rani Diana Sahni; Kartikeya Cherabuddi; Alan J Wolfe; James Kojo Prah
LATEST VERSION PUBLISHED 22 May 2024
https://doi.org/10.12688/f1000research.143514.2
Review metrics
Revised
Essential growth factor receptors for fibroblast homeostasis and activation: Fibroblast Growth Factor Receptor (FGFR), Platelet Derived Growth Factor Receptor (PDGFR), and Transforming Growth Factor β Receptor (TGFβR)
[version 2; peer review: 2 approved]
Maye F. Cheng, Faizah S. Abdullah, Matthew B. Buechler
Peer Reviewers Natalia Pikor; Michelle D Tallquist
  • Funder
  • Canadian Institutes of Health Research
LATEST VERSION PUBLISHED 21 May 2024
https://doi.org/10.12688/f1000research.132627.3
Research Article metrics
Revised
Integrated re-analysis of transcriptomic and proteomic datasets reveals potential mechanisms for Zika viral-based oncolytic therapy in neuroblastoma
[version 3; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Matt Sherwood, Yilu Zhou, Yi Sui, Yihua Wang, Paul Skipp, Carolini Kaid, Juliet Gray, Keith Okamoto, Rob M. Ewing
Peer Reviewers Griffith D Parks; Estanislao Nistal-Villan and Vicent Tur-Planells; Thomas C. N. Leung; Monica Martinez Pacheco
  • Funders
  • Rosetrees Trust
  • Neuroblastoma UK
  • Medical Research Council
  • Children's Cancer and Leukaemia Group
  • Wessex Medical Research
LATEST VERSION PUBLISHED 21 May 2024
https://doi.org/10.12688/f1000research.140393.3
Research Article metrics
Revised
Search engine Performance optimization: methods and techniques
[version 3; peer review: 2 approved, 1 not approved]
Serge Stephane AMAN, Behou Gerard N'GUESSAN, Djama Djoman Alfred AGBO, Tiemoman KONE
Peer Reviewers Dimitrios Giomelakis; Mike Nkongolo Wa Nkongolo; Carlos Lopezosa
LATEST VERSION PUBLISHED 21 May 2024
441-460 of 5,380 ARTICLES
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